Literature DB >> 35267505

Recent Advances of Deep Learning for Computational Histopathology: Principles and Applications.

Yawen Wu1, Michael Cheng2,3, Shuo Huang1, Zongxiang Pei1, Yingli Zuo1, Jianxin Liu1, Kai Yang1, Qi Zhu1, Jie Zhang2,3, Honghai Hong4, Daoqiang Zhang1, Kun Huang2,3, Liang Cheng5, Wei Shao1.   

Abstract

With the remarkable success of digital histopathology, we have witnessed a rapid expansion of the use of computational methods for the analysis of digital pathology and biopsy image patches. However, the unprecedented scale and heterogeneous patterns of histopathological images have presented critical computational bottlenecks requiring new computational histopathology tools. Recently, deep learning technology has been extremely successful in the field of computer vision, which has also boosted considerable interest in digital pathology applications. Deep learning and its extensions have opened several avenues to tackle many challenging histopathological image analysis problems including color normalization, image segmentation, and the diagnosis/prognosis of human cancers. In this paper, we provide a comprehensive up-to-date review of the deep learning methods for digital H&E-stained pathology image analysis. Specifically, we first describe recent literature that uses deep learning for color normalization, which is one essential research direction for H&E-stained histopathological image analysis. Followed by the discussion of color normalization, we review applications of the deep learning method for various H&E-stained image analysis tasks such as nuclei and tissue segmentation. We also summarize several key clinical studies that use deep learning for the diagnosis and prognosis of human cancers from H&E-stained histopathological images. Finally, online resources and open research problems on pathological image analysis are also provided in this review for the convenience of researchers who are interested in this exciting field.

Entities:  

Keywords:  a whole-slide pathological imaging (WSI); artificial intelligence; color normalization; diagnosis and prognosis; digital pathology image analysis; machine learning; segmentation

Year:  2022        PMID: 35267505      PMCID: PMC8909166          DOI: 10.3390/cancers14051199

Source DB:  PubMed          Journal:  Cancers (Basel)        ISSN: 2072-6694            Impact factor:   6.639


  78 in total

1.  Multi-scale fully convolutional neural networks for histopathology image segmentation: From nuclear aberrations to the global tissue architecture.

Authors:  Rüdiger Schmitz; Frederic Madesta; Maximilian Nielsen; Jenny Krause; Stefan Steurer; René Werner; Thomas Rösch
Journal:  Med Image Anal       Date:  2021-02-18       Impact factor: 8.545

2.  Enabling a Single Deep Learning Model for Accurate Gland Instance Segmentation: A Shape-Aware Adversarial Learning Framework.

Authors:  Zengqiang Yan; Xin Yang; Kwang-Ting Cheng
Journal:  IEEE Trans Med Imaging       Date:  2020-01-14       Impact factor: 10.048

3.  Assessment of algorithms for mitosis detection in breast cancer histopathology images.

Authors:  Mitko Veta; Paul J van Diest; Stefan M Willems; Haibo Wang; Anant Madabhushi; Angel Cruz-Roa; Fabio Gonzalez; Anders B L Larsen; Jacob S Vestergaard; Anders B Dahl; Dan C Cireşan; Jürgen Schmidhuber; Alessandro Giusti; Luca M Gambardella; F Boray Tek; Thomas Walter; Ching-Wei Wang; Satoshi Kondo; Bogdan J Matuszewski; Frederic Precioso; Violet Snell; Josef Kittler; Teofilo E de Campos; Adnan M Khan; Nasir M Rajpoot; Evdokia Arkoumani; Miangela M Lacle; Max A Viergever; Josien P W Pluim
Journal:  Med Image Anal       Date:  2014-11-29       Impact factor: 8.545

4.  Development and validation of a machine learning-based nomogram for prediction of intrahepatic cholangiocarcinoma in patients with intrahepatic lithiasis.

Authors:  Xian Shen; Huanhu Zhao; Xing Jin; Junyu Chen; Zhengping Yu; Kuvaneshan Ramen; Xiangwu Zheng; Xiuling Wu; Yunfeng Shan; Jianling Bai; Qiyu Zhang; Qiqiang Zeng
Journal:  Hepatobiliary Surg Nutr       Date:  2021-12       Impact factor: 7.293

5.  High resolution histopathology image generation and segmentation through adversarial training.

Authors:  Wenyuan Li; Jiayun Li; Jennifer Polson; Zichen Wang; William Speier; Corey Arnold
Journal:  Med Image Anal       Date:  2021-11-03       Impact factor: 8.545

6.  Stain Normalization using Sparse AutoEncoders (StaNoSA): Application to digital pathology.

Authors:  Andrew Janowczyk; Ajay Basavanhally; Anant Madabhushi
Journal:  Comput Med Imaging Graph       Date:  2016-05-16       Impact factor: 4.790

7.  OpenSlide: A vendor-neutral software foundation for digital pathology.

Authors:  Adam Goode; Benjamin Gilbert; Jan Harkes; Drazen Jukic; Mahadev Satyanarayanan
Journal:  J Pathol Inform       Date:  2013-09-27

8.  SCAU-Net: Spatial-Channel Attention U-Net for Gland Segmentation.

Authors:  Peng Zhao; Jindi Zhang; Weijia Fang; Shuiguang Deng
Journal:  Front Bioeng Biotechnol       Date:  2020-07-03

9.  PathoFusion: An Open-Source AI Framework for Recognition of Pathomorphological Features and Mapping of Immunohistochemical Data.

Authors:  Guoqing Bao; Xiuying Wang; Ran Xu; Christina Loh; Oreoluwa Daniel Adeyinka; Dula Asheka Pieris; Svetlana Cherepanoff; Gary Gracie; Maggie Lee; Kerrie L McDonald; Anna K Nowak; Richard Banati; Michael E Buckland; Manuel B Graeber
Journal:  Cancers (Basel)       Date:  2021-02-04       Impact factor: 6.639

10.  Computational analysis of pathological images enables a better diagnosis of TFE3 Xp11.2 translocation renal cell carcinoma.

Authors:  Jun Cheng; Zhi Han; Rohit Mehra; Wei Shao; Michael Cheng; Qianjin Feng; Dong Ni; Kun Huang; Liang Cheng; Jie Zhang
Journal:  Nat Commun       Date:  2020-04-14       Impact factor: 14.919

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  1 in total

Review 1.  Perspectives for 3D-Bioprinting in Modeling of Tumor Immune Evasion.

Authors:  Rafał Staros; Agata Michalak; Kinga Rusinek; Krzysztof Mucha; Zygmunt Pojda; Radosław Zagożdżon
Journal:  Cancers (Basel)       Date:  2022-06-26       Impact factor: 6.575

  1 in total

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