Literature DB >> 27594427

Polar Positioning of Phase-Separated Liquid Compartments in Cells Regulated by an mRNA Competition Mechanism.

Shambaditya Saha1, Christoph A Weber2, Marco Nousch3, Omar Adame-Arana2, Carsten Hoege1, Marco Y Hein4, Erin Osborne-Nishimura5, Julia Mahamid4, Marcus Jahnel1, Louise Jawerth6, Andrej Pozniakovski1, Christian R Eckmann3, Frank Jülicher7, Anthony A Hyman8.   

Abstract

P granules are non-membrane-bound RNA-protein compartments that are involved in germline development in C. elegans. They are liquids that condense at one end of the embryo by localized phase separation, driven by gradients of polarity proteins such as the mRNA-binding protein MEX-5. To probe how polarity proteins regulate phase separation, we combined biochemistry and theoretical modeling. We reconstitute P granule-like droplets in vitro using a single protein PGL-3. By combining in vitro reconstitution with measurements of intracellular concentrations, we show that competition between PGL-3 and MEX-5 for mRNA can regulate the formation of PGL-3 droplets. Using theory, we show that, in a MEX-5 gradient, this mRNA competition mechanism can drive a gradient of P granule assembly with similar spatial and temporal characteristics to P granule assembly in vivo. We conclude that gradients of polarity proteins can position RNP granules during development by using RNA competition to regulate local phase separation.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27594427      PMCID: PMC5034880          DOI: 10.1016/j.cell.2016.08.006

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  53 in total

1.  Generation of GTP-bound Ran by RCC1 is required for chromatin-induced mitotic spindle formation.

Authors:  R E Carazo-Salas; G Guarguaglini; O J Gruss; A Segref; E Karsenti; I W Mattaj
Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

2.  mRNA diffusion explains protein gradients in Drosophila early development.

Authors:  Rui Dilão; Daniele Muraro
Journal:  J Theor Biol       Date:  2010-03-15       Impact factor: 2.691

3.  Spatial organization of the cell cytoplasm by position-dependent phase separation.

Authors:  Chiu Fan Lee; Clifford P Brangwynne; Jöbin Gharakhani; Anthony A Hyman; Frank Jülicher
Journal:  Phys Rev Lett       Date:  2013-08-20       Impact factor: 9.161

4.  In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics.

Authors:  Jia-Xuan Chen; Patricia G Cipriani; Desirea Mecenas; Jolanta Polanowska; Fabio Piano; Kristin C Gunsalus; Matthias Selbach
Journal:  Mol Cell Proteomics       Date:  2016-02-24       Impact factor: 5.911

Review 5.  P granule assembly and function in Caenorhabditis elegans germ cells.

Authors:  Dustin Updike; Susan Strome
Journal:  J Androl       Date:  2009-10-29

Review 6.  Molecular genetics of asymmetric cleavage in the early Caenorhabditis elegans embryo.

Authors:  S Guo; K J Kemphues
Journal:  Curr Opin Genet Dev       Date:  1996-08       Impact factor: 5.578

Review 7.  Cytoplasmic localization and asymmetric division in the early embryo of Caenorhabditis elegans.

Authors:  Erik E Griffin
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2015-03-11       Impact factor: 5.814

8.  Coilin-dependent snRNP assembly is essential for zebrafish embryogenesis.

Authors:  Magdalena Strzelecka; Simon Trowitzsch; Gert Weber; Reinhard Lührmann; Andrew C Oates; Karla M Neugebauer
Journal:  Nat Struct Mol Biol       Date:  2010-03-28       Impact factor: 15.369

9.  A Transcriptional Lineage of the Early C. elegans Embryo.

Authors:  Sophia C Tintori; Erin Osborne Nishimura; Patrick Golden; Jason D Lieb; Bob Goldstein
Journal:  Dev Cell       Date:  2016-08-22       Impact factor: 12.270

10.  Soma-germline asymmetry in the distributions of embryonic RNAs in Caenorhabditis elegans.

Authors:  G Seydoux; A Fire
Journal:  Development       Date:  1994-10       Impact factor: 6.868

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  109 in total

1.  Organizing the oocyte: RNA localization meets phase separation.

Authors:  Sarah E Cabral; Kimberly L Mowry
Journal:  Curr Top Dev Biol       Date:  2020-03-09       Impact factor: 4.897

2.  A quantitative inventory of yeast P body proteins reveals principles of composition and specificity.

Authors:  Wenmin Xing; Denise Muhlrad; Roy Parker; Michael K Rosen
Journal:  Elife       Date:  2020-06-19       Impact factor: 8.140

3.  Tug of War between Condensate Phases in a Minimal Macromolecular System.

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Journal:  J Am Chem Soc       Date:  2020-05-04       Impact factor: 15.419

Review 4.  Shaping Gene Expression by Landscaping Chromatin Architecture: Lessons from a Master.

Authors:  Vittorio Sartorelli; Pier Lorenzo Puri
Journal:  Mol Cell       Date:  2018-06-07       Impact factor: 17.970

Review 5.  Cell Biology of the Caenorhabditis elegans Nucleus.

Authors:  Orna Cohen-Fix; Peter Askjaer
Journal:  Genetics       Date:  2017-01       Impact factor: 4.562

6.  U2AF65 assemblies drive sequence-specific splice site recognition.

Authors:  Manel Tari; Valérie Manceau; Jean de Matha Salone; Asaki Kobayashi; David Pastré; Alexandre Maucuer
Journal:  EMBO Rep       Date:  2019-07-04       Impact factor: 8.807

Review 7.  Formation of biological condensates via phase separation: Characteristics, analytical methods, and physiological implications.

Authors:  Zhe Feng; Xudong Chen; Xiandeng Wu; Mingjie Zhang
Journal:  J Biol Chem       Date:  2019-08-23       Impact factor: 5.157

Review 8.  Cellular sensing by phase separation: Using the process, not just the products.

Authors:  Haneul Yoo; Catherine Triandafillou; D Allan Drummond
Journal:  J Biol Chem       Date:  2019-03-15       Impact factor: 5.157

Review 9.  The Role of RNA in Biological Phase Separations.

Authors:  Marta M Fay; Paul J Anderson
Journal:  J Mol Biol       Date:  2018-05-10       Impact factor: 5.469

Review 10.  Engineering spatiotemporal organization and dynamics in synthetic cells.

Authors:  Alessandro Groaz; Hossein Moghimianavval; Franco Tavella; Tobias W Giessen; Anthony G Vecchiarelli; Qiong Yang; Allen P Liu
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2020-11-21
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