Literature DB >> 29887393

Shaping Gene Expression by Landscaping Chromatin Architecture: Lessons from a Master.

Vittorio Sartorelli1, Pier Lorenzo Puri2.   

Abstract

Since its discovery as a skeletal muscle-specific transcription factor able to reprogram somatic cells into differentiated myofibers, MyoD has provided an instructive model to understand how transcription factors regulate gene expression. Reciprocally, studies of other transcriptional regulators have provided testable hypotheses to further understand how MyoD activates transcription. Using MyoD as a reference, in this review, we discuss the similarities and differences in the regulatory mechanisms employed by tissue-specific transcription factors to access DNA and regulate gene expression by cooperatively shaping the chromatin landscape within the context of cellular differentiation.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  MyoD; chromatin architecture; epigenetics; gene expression; myogenesis; pioneer factors; transcription factors

Mesh:

Substances:

Year:  2018        PMID: 29887393      PMCID: PMC6076330          DOI: 10.1016/j.molcel.2018.04.025

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  206 in total

Review 1.  Regulation of muscle regulatory factors by DNA-binding, interacting proteins, and post-transcriptional modifications.

Authors:  P L Puri; V Sartorelli
Journal:  J Cell Physiol       Date:  2000-11       Impact factor: 6.384

2.  CTCF promotes muscle differentiation by modulating the activity of myogenic regulatory factors.

Authors:  Paul Delgado-Olguín; Koroboshka Brand-Arzamendi; Ian C Scott; Benno Jungblut; Didier Y Stainier; Benoit G Bruneau; Félix Recillas-Targa
Journal:  J Biol Chem       Date:  2011-02-02       Impact factor: 5.157

3.  MicroRNA-mediated conversion of human fibroblasts to neurons.

Authors:  Andrew S Yoo; Alfred X Sun; Li Li; Aleksandr Shcheglovitov; Thomas Portmann; Yulong Li; Chris Lee-Messer; Ricardo E Dolmetsch; Richard W Tsien; Gerald R Crabtree
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

4.  c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells.

Authors:  Zuqin Nie; Gangqing Hu; Gang Wei; Kairong Cui; Arito Yamane; Wolfgang Resch; Ruoning Wang; Douglas R Green; Lino Tessarollo; Rafael Casellas; Keji Zhao; David Levens
Journal:  Cell       Date:  2012-09-28       Impact factor: 41.582

5.  Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors.

Authors:  Andrew J Oldfield; Pengyi Yang; Amanda E Conway; Senthilkumar Cinghu; Johannes M Freudenberg; Sailu Yellaboina; Raja Jothi
Journal:  Mol Cell       Date:  2014-08-14       Impact factor: 17.970

6.  Molecular mechanisms of myogenic coactivation by p300: direct interaction with the activation domain of MyoD and with the MADS box of MEF2C.

Authors:  V Sartorelli; J Huang; Y Hamamori; L Kedes
Journal:  Mol Cell Biol       Date:  1997-02       Impact factor: 4.272

7.  CREB-binding protein/p300 activates MyoD by acetylation.

Authors:  A Polesskaya; A Duquet; I Naguibneva; C Weise; A Vervisch; E Bengal; F Hucho; P Robin; A Harel-Bellan
Journal:  J Biol Chem       Date:  2000-11-03       Impact factor: 5.157

8.  The p38 SAPK is recruited to chromatin via its interaction with transcription factors.

Authors:  Isabel Ferreiro; Montserrat Barragan; Albert Gubern; Esteban Ballestar; Manel Joaquin; Francesc Posas
Journal:  J Biol Chem       Date:  2010-08-03       Impact factor: 5.157

9.  Spatial re-organization of myogenic regulatory sequences temporally controls gene expression.

Authors:  Akihito Harada; Chandrashekara Mallappa; Seiji Okada; John T Butler; Stephen P Baker; Jeanne B Lawrence; Yasuyuki Ohkawa; Anthony N Imbalzano
Journal:  Nucleic Acids Res       Date:  2015-02-04       Impact factor: 16.971

10.  MyoD targets TAF3/TRF3 to activate myogenin transcription.

Authors:  Maria Divina E Deato; Michael T Marr; Theo Sottero; Carla Inouye; Ping Hu; Robert Tjian
Journal:  Mol Cell       Date:  2008-10-10       Impact factor: 17.970

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  18 in total

1.  Transcription Factor-Directed Re-wiring of Chromatin Architecture for Somatic Cell Nuclear Reprogramming toward trans-Differentiation.

Authors:  Alessandra Dall'Agnese; Luca Caputo; Chiara Nicoletti; Julia di Iulio; Anthony Schmitt; Sole Gatto; Yarui Diao; Zhen Ye; Mattia Forcato; Ranjan Perera; Silvio Bicciato; Amalio Telenti; Bing Ren; Pier Lorenzo Puri
Journal:  Mol Cell       Date:  2019-09-10       Impact factor: 17.970

Review 2.  Control of satellite cell function in muscle regeneration and its disruption in ageing.

Authors:  Pedro Sousa-Victor; Laura García-Prat; Pura Muñoz-Cánoves
Journal:  Nat Rev Mol Cell Biol       Date:  2021-10-18       Impact factor: 94.444

Review 3.  Old cogs, new tricks: the evolution of gene expression in a chromatin context.

Authors:  Paul B Talbert; Michael P Meers; Steven Henikoff
Journal:  Nat Rev Genet       Date:  2019-05       Impact factor: 53.242

4.  MyoD induces ARTD1 and nucleoplasmic poly-ADP-ribosylation during fibroblast to myoblast transdifferentiation.

Authors:  Lavinia Bisceglie; Ann-Katrin Hopp; Kapila Gunasekera; Roni H Wright; François Le Dily; Enrique Vidal; Alessandra Dall'Agnese; Luca Caputo; Chiara Nicoletti; Pier Lorenzo Puri; Miguel Beato; Michael O Hottiger
Journal:  iScience       Date:  2021-04-17

5.  Muscle regeneration controlled by a designated DNA dioxygenase.

Authors:  Hongye Wang; Yile Huang; Ming Yu; Yang Yu; Sheng Li; Huating Wang; Hao Sun; Bing Li; Guoliang Xu; Ping Hu
Journal:  Cell Death Dis       Date:  2021-05-25       Impact factor: 8.469

6.  RORγt-driven TH17 Cell Differentiation Requires Epigenetic Control by the Swi/Snf Chromatin Remodeling Complex.

Authors:  Sungkyu Lee; Jieun Kim; Hyungyu Min; Rho H Seong
Journal:  iScience       Date:  2020-04-29

7.  LncRNA AY promotes hepatocellular carcinoma metastasis by stimulating ITGAV transcription.

Authors:  Chun Lan Kang; Bing Qi; Qian Qian Cai; Li Sheng Fu; Ying Yang; Chang Tang; Ping Zhu; Qi Wen Chen; Jing Pan; Mei Hua Chen; Xing Zhong Wu
Journal:  Theranostics       Date:  2019-06-09       Impact factor: 11.556

8.  Smad7:β-catenin complex regulates myogenic gene transcription.

Authors:  Soma Tripathi; Tetsuaki Miyake; John C McDermott
Journal:  Cell Death Dis       Date:  2019-05-16       Impact factor: 8.469

9.  Prdm16-mediated H3K9 methylation controls fibro-adipogenic progenitors identity during skeletal muscle repair.

Authors:  Beatrice Biferali; Valeria Bianconi; Daniel Fernandez Perez; Sophie Pöhle Kronawitter; Fabrizia Marullo; Roberta Maggio; Tiziana Santini; Federica Polverino; Stefano Biagioni; Vincenzo Summa; Carlo Toniatti; Diego Pasini; Sigmar Stricker; Romano Di Fabio; Fulvio Chiacchiera; Giovanna Peruzzi; Chiara Mozzetta
Journal:  Sci Adv       Date:  2021-06-02       Impact factor: 14.136

10.  Poly(ADP-ribose) Polymerase 1 (PARP1) restrains MyoD-dependent gene expression during muscle differentiation.

Authors:  Francesca Matteini; Oriella Andresini; Stefano Petrai; Cecilia Battistelli; Marianna Nicoletta Rossi; Rossella Maione
Journal:  Sci Rep       Date:  2020-09-15       Impact factor: 4.379

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