Literature DB >> 27584618

A Cell-Free Assay Using Xenopus laevis Embryo Extracts to Study Mechanisms of Nuclear Size Regulation.

Lisa J Edens1, Daniel L Levy2.   

Abstract

A fundamental question in cell biology is how cell and organelle sizes are regulated. It has long been recognized that the size of the nucleus generally scales with the size of the cell, notably during embryogenesis when dramatic reductions in both cell and nuclear sizes occur. Mechanisms of nuclear size regulation are largely unknown and may be relevant to cancer where altered nuclear size is a key diagnostic and prognostic parameter. In vivo approaches to identifying nuclear size regulators are complicated by the essential and complex nature of nuclear function. The in vitro approach described here to study nuclear size control takes advantage of the normal reductions in nuclear size that occur during Xenopus laevis development. First, nuclei are assembled in X. laevis egg extract. Then, these nuclei are isolated and resuspended in cytoplasm from late stage embryos. After a 30 - 90 min incubation period, nuclear surface area decreases by 20 - 60%, providing a useful assay to identify cytoplasmic components present in late stage embryos that contribute to developmental nuclear size scaling. A major advantage of this approach is the relative facility with which the egg and embryo extracts can be biochemically manipulated, allowing for the identification of novel proteins and activities that regulate nuclear size. As with any in vitro approach, validation of results in an in vivo system is important, and microinjection of X. laevis embryos is particularly appropriate for these studies.

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Year:  2016        PMID: 27584618      PMCID: PMC5091746          DOI: 10.3791/54173

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  39 in total

1.  Correlation of nuclear morphometry with pathologic parameters in ductal carcinoma in situ of the breast.

Authors:  P H Tan; B B Goh; G Chiang; B H Bay
Journal:  Mod Pathol       Date:  2001-10       Impact factor: 7.842

Review 2.  In vitro study of nuclear assembly and nuclear import using Xenopus egg extracts.

Authors:  Rene C Chan; Douglass I Forbes
Journal:  Methods Mol Biol       Date:  2006

3.  Investigating mitotic spindle assembly and function in vitro using Xenopus laevis egg extracts.

Authors:  Eva Hannak; Rebecca Heald
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

Review 4.  Learning about cancer from frogs: analysis of mitotic spindles in Xenopus egg extracts.

Authors:  Marie K Cross; Maureen A Powers
Journal:  Dis Model Mech       Date:  2009 Nov-Dec       Impact factor: 5.758

5.  A major developmental transition in early Xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage.

Authors:  J Newport; M Kirschner
Journal:  Cell       Date:  1982-10       Impact factor: 41.582

6.  Katanin contributes to interspecies spindle length scaling in Xenopus.

Authors:  Rose Loughlin; Jeremy D Wilbur; Francis J McNally; François J Nédélec; Rebecca Heald
Journal:  Cell       Date:  2011-12-09       Impact factor: 41.582

7.  Quantitative alterations in nuclear structure predict prostate carcinoma distant metastasis and death in men with biochemical recurrence after radical prostatectomy.

Authors:  Masood A Khan; Patrick C Walsh; M Craig Miller; Wesley D Bales; Jonathan I Epstein; Leslie A Mangold; Alan W Partin; Robert W Veltri
Journal:  Cancer       Date:  2003-12-15       Impact factor: 6.860

8.  A class of membrane proteins shaping the tubular endoplasmic reticulum.

Authors:  Gia K Voeltz; William A Prinz; Yoko Shibata; Julia M Rist; Tom A Rapoport
Journal:  Cell       Date:  2006-02-10       Impact factor: 41.582

Review 9.  Biological Scaling Problems and Solutions in Amphibians.

Authors:  Daniel L Levy; Rebecca Heald
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-08-10       Impact factor: 10.005

10.  Evidence for an upper limit to mitotic spindle length.

Authors:  Martin Wühr; Yao Chen; Sophie Dumont; Aaron C Groen; Daniel J Needleman; Adrian Salic; Timothy J Mitchison
Journal:  Curr Biol       Date:  2008-08-26       Impact factor: 10.834

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  7 in total

1.  Nucleus Assembly and Import in Xenopus laevis Egg Extract.

Authors:  Pan Chen; Daniel L Levy
Journal:  Cold Spring Harb Protoc       Date:  2018-06-01

2.  Visualizing Nuclear Pore Complexes in Xenopus Egg Extracts.

Authors:  Sampada Mishra; Daniel L Levy
Journal:  Methods Mol Biol       Date:  2022

Review 3.  Use of Xenopus cell-free extracts to study size regulation of subcellular structures.

Authors:  Predrag Jevtić; Ana Milunović-Jevtić; Matthew R Dilsaver; Jesse C Gatlin; Daniel L Levy
Journal:  Int J Dev Biol       Date:  2016       Impact factor: 2.203

4.  Chemical Screening Using Cell-Free Xenopus Egg Extract.

Authors:  Matthew R Broadus; Ethan Lee
Journal:  Cold Spring Harb Protoc       Date:  2018-08-01

5.  PKC-mediated phosphorylation of nuclear lamins at a single serine residue regulates interphase nuclear size in Xenopus and mammalian cells.

Authors:  Lisa J Edens; Matthew R Dilsaver; Daniel L Levy
Journal:  Mol Biol Cell       Date:  2017-03-29       Impact factor: 4.138

6.  ELUCIDATING NUCLEAR SIZE CONTROL IN THE XENOPUS MODEL SYSTEM.

Authors:  Jevtić Predrag; Levy L Daniel
Journal:  Vet Glas       Date:  2017-11-16

7.  Nucleoplasmin is a limiting component in the scaling of nuclear size with cytoplasmic volume.

Authors:  Pan Chen; Miroslav Tomschik; Katherine M Nelson; John Oakey; Jesse C Gatlin; Daniel L Levy
Journal:  J Cell Biol       Date:  2019-10-21       Impact factor: 10.539

  7 in total

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