Literature DB >> 29321282

Nucleus Assembly and Import in Xenopus laevis Egg Extract.

Pan Chen1, Daniel L Levy2.   

Abstract

Xenopus egg extract represents a powerful cell-free biochemical tool for studying organelle assembly and function. Large quantities of cytoplasm can be isolated, and biochemical manipulation of extract composition and cell cycle state is relatively straightforward. In this protocol, we describe the reconstitution of nuclear assembly by adding a chromatin source to interphasic X. laevis egg extract. Intact nuclei assemble within 30-45 min of initiating the reaction, followed by nuclear growth. We also describe methods for imaging and quantifying nuclear import kinetics. Recombinant proteins or small molecules of interest can be added to the extract before or after nuclear assembly, and immunodepletion allows for removal of specific proteins from the extract. This approach will continue to inform mechanisms of nuclear assembly, nuclear pore complex assembly and function, nucleocytoplasmic transport, DNA replication, nuclear envelope breakdown, and nuclear size and shape regulation.
© 2018 Cold Spring Harbor Laboratory Press.

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Year:  2018        PMID: 29321282      PMCID: PMC6540748          DOI: 10.1101/pdb.prot097196

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  14 in total

1.  Nuclear pores form de novo from both sides of the nuclear envelope.

Authors:  Maximiliano A D'Angelo; Daniel J Anderson; Erin Richard; Martin W Hetzer
Journal:  Science       Date:  2006-04-21       Impact factor: 47.728

2.  Investigating mitotic spindle assembly and function in vitro using Xenopus laevis egg extracts.

Authors:  Eva Hannak; Rebecca Heald
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

3.  Nuclear envelope formation by chromatin-mediated reorganization of the endoplasmic reticulum.

Authors:  Daniel J Anderson; Martin W Hetzer
Journal:  Nat Cell Biol       Date:  2007-09-09       Impact factor: 28.824

Review 4.  Methods for studying spindle assembly and chromosome condensation in Xenopus egg extracts.

Authors:  Thomas J Maresca; Rebecca Heald
Journal:  Methods Mol Biol       Date:  2006

5.  A Cell-Free Assay Using Xenopus laevis Embryo Extracts to Study Mechanisms of Nuclear Size Regulation.

Authors:  Lisa J Edens; Daniel L Levy
Journal:  J Vis Exp       Date:  2016-08-08       Impact factor: 1.355

6.  Isolation of a protein that is essential for the first step of nuclear protein import.

Authors:  D Görlich; S Prehn; R A Laskey; E Hartmann
Journal:  Cell       Date:  1994-12-02       Impact factor: 41.582

7.  Concentration-dependent Effects of Nuclear Lamins on Nuclear Size in Xenopus and Mammalian Cells.

Authors:  Predrag Jevtić; Lisa J Edens; Xiaoyang Li; Thang Nguyen; Pan Chen; Daniel L Levy
Journal:  J Biol Chem       Date:  2015-10-01       Impact factor: 5.157

8.  Nuclear size is regulated by importin α and Ntf2 in Xenopus.

Authors:  Daniel L Levy; Rebecca Heald
Journal:  Cell       Date:  2010-10-15       Impact factor: 41.582

9.  An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments.

Authors:  Colin Echeverría Aitken; R Andrew Marshall; Joseph D Puglisi
Journal:  Biophys J       Date:  2007-10-05       Impact factor: 4.033

10.  Nuclear size is sensitive to NTF2 protein levels in a manner dependent on Ran binding.

Authors:  Lidija D Vuković; Predrag Jevtić; Zhaojie Zhang; Bradley A Stohr; Daniel L Levy
Journal:  J Cell Sci       Date:  2016-01-28       Impact factor: 5.285

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  5 in total

1.  The Perinuclear ER Scales Nuclear Size Independently of Cell Size in Early Embryos.

Authors:  Richik Nilay Mukherjee; Jérémy Sallé; Serge Dmitrieff; Katherine M Nelson; John Oakey; Nicolas Minc; Daniel L Levy
Journal:  Dev Cell       Date:  2020-05-29       Impact factor: 12.270

Review 2.  Organelle size scaling over embryonic development.

Authors:  Chase C Wesley; Sampada Mishra; Daniel L Levy
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2020-01-31       Impact factor: 5.814

3.  Reconstituting Nuclear and Chromosome Dynamics Using Xenopus Extracts.

Authors:  Susannah Rankin
Journal:  Cold Spring Harb Protoc       Date:  2019-03-01

4.  Visualizing Nuclear Pore Complexes in Xenopus Egg Extracts.

Authors:  Sampada Mishra; Daniel L Levy
Journal:  Methods Mol Biol       Date:  2022

5.  Nucleoplasmin is a limiting component in the scaling of nuclear size with cytoplasmic volume.

Authors:  Pan Chen; Miroslav Tomschik; Katherine M Nelson; John Oakey; Jesse C Gatlin; Daniel L Levy
Journal:  J Cell Biol       Date:  2019-10-21       Impact factor: 10.539

  5 in total

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