Literature DB >> 27552705

Knowns and unknowns in metabolomics identified by multidimensional NMR and hybrid MS/NMR methods.

Kerem Bingol1, Rafael Brüschweiler2.   

Abstract

Metabolomics continues to make rapid progress through the development of new and better methods and their applications to gain insight into the metabolism of a wide range of different biological systems from a systems biology perspective. Customization of NMR databases and search tools allows the faster and more accurate identification of known metabolites, whereas the identification of unknowns, without a need for extensive purification, requires new strategies to integrate NMR with mass spectrometry, cheminformatics, and computational methods. For some applications, the use of covalent and non-covalent attachments in the form of labeled tags or nanoparticles can significantly reduce the complexity of these tasks.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27552705      PMCID: PMC5305439          DOI: 10.1016/j.copbio.2016.07.006

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  46 in total

1.  A fast NMR method for resonance assignments: application to metabolomics.

Authors:  Shivanand M Pudakalakatti; Abhinav Dubey; Garima Jaipuria; U Shubhashree; Satish Kumar Adiga; Detlef Moskau; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2014-02-02       Impact factor: 2.835

Review 2.  Applications of NMR spectroscopy to systems biochemistry.

Authors:  Teresa W-M Fan; Andrew N Lane
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-06       Impact factor: 9.795

3.  Principal component analysis of urine metabolites detected by NMR and DESI-MS in patients with inborn errors of metabolism.

Authors:  Zhengzheng Pan; Haiwei Gu; Nari Talaty; Huanwen Chen; Narasimhamurthy Shanaiah; Bryan E Hainline; R Graham Cooks; Daniel Raftery
Journal:  Anal Bioanal Chem       Date:  2006-07-05       Impact factor: 4.142

4.  Carbon backbone topology of the metabolome of a cell.

Authors:  Kerem Bingol; Fengli Zhang; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2012-05-17       Impact factor: 15.419

5.  Use of Charged Nanoparticles in NMR-Based Metabolomics for Spectral Simplification and Improved Metabolite Identification.

Authors:  Bo Zhang; Mouzhe Xie; Lei Bruschweiler-Li; Kerem Bingol; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2015-07-01       Impact factor: 6.986

6.  An accelerated workflow for untargeted metabolomics using the METLIN database.

Authors:  Ralf Tautenhahn; Kevin Cho; Winnie Uritboonthai; Zhengjiang Zhu; Gary J Patti; Gary Siuzdak
Journal:  Nat Biotechnol       Date:  2012-09       Impact factor: 54.908

7.  15N-cholamine--a smart isotope tag for combining NMR- and MS-based metabolite profiling.

Authors:  Fariba Tayyari; G A Nagana Gowda; Haiwei Gu; Daniel Raftery
Journal:  Anal Chem       Date:  2013-08-26       Impact factor: 6.986

8.  Nanoparticle-Assisted Removal of Protein in Human Serum for Metabolomics Studies.

Authors:  Bo Zhang; Mouzhe Xie; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2015-12-08       Impact factor: 6.986

9.  2D NMR barcoding and differential analysis of complex mixtures for chemical identification: the Actaea triterpenes.

Authors:  Feng Qiu; James B McAlpine; David C Lankin; Ian Burton; Tobias Karakach; Shao-Nong Chen; Guido F Pauli
Journal:  Anal Chem       Date:  2014-03-27       Impact factor: 6.986

10.  Customized metabolomics database for the analysis of NMR ¹H-¹H TOCSY and ¹³C-¹H HSQC-TOCSY spectra of complex mixtures.

Authors:  Kerem Bingol; Lei Bruschweiler-Li; Da-Wei Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2014-05-20       Impact factor: 6.986

View more
  21 in total

1.  Comprehensive Metabolite Identification Strategy Using Multiple Two-Dimensional NMR Spectra of a Complex Mixture Implemented in the COLMARm Web Server.

Authors:  Kerem Bingol; Da-Wei Li; Bo Zhang; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2016-12-06       Impact factor: 6.986

Review 2.  Recent Advances in NMR-Based Metabolomics.

Authors:  G A Nagana Gowda; Daniel Raftery
Journal:  Anal Chem       Date:  2016-12-02       Impact factor: 6.986

Review 3.  Epimetabolites: discovering metabolism beyond building and burning.

Authors:  Megan R Showalter; Tomas Cajka; Oliver Fiehn
Journal:  Curr Opin Chem Biol       Date:  2017-02-16       Impact factor: 8.822

Review 4.  Chemical Discovery in the Era of Metabolomics.

Authors:  Miriam Sindelar; Gary J Patti
Journal:  J Am Chem Soc       Date:  2020-05-11       Impact factor: 15.419

Review 5.  Pharmacognosy in the digital era: shifting to contextualized metabolomics.

Authors:  Pierre-Marie Allard; Jonathan Bisson; Antonio Azzollini; Guido F Pauli; Geoffrey A Cordell; Jean-Luc Wolfender
Journal:  Curr Opin Biotechnol       Date:  2018-02-27       Impact factor: 9.740

6.  Systems-level analysis of isotopic labeling in untargeted metabolomic data by X13CMS.

Authors:  Elizabeth M Llufrio; Kevin Cho; Gary J Patti
Journal:  Nat Protoc       Date:  2019-06-05       Impact factor: 13.491

7.  Effect of Biochar on Microbial Growth: A Metabolomics and Bacteriological Investigation in E. coli.

Authors:  Rebecca A Hill; John Hunt; Emily Sanders; Melanie Tran; Griffin A Burk; Todd E Mlsna; Nicholas C Fitzkee
Journal:  Environ Sci Technol       Date:  2019-02-14       Impact factor: 9.028

8.  Real-Time Pure Shift HSQC NMR for Untargeted Metabolomics.

Authors:  István Timári; Cheng Wang; Alexandar L Hansen; Gilson Costa Dos Santos; Sung Ok Yoon; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2019-01-16       Impact factor: 6.986

9.  Perdeuterated and 13C-enriched myo-inositol for DNP assisted monitoring of enzymatic phosphorylation by inositol-3-kinase.

Authors:  M J Moure; Y Zhuo; G J Boons; J H Prestegard
Journal:  Chem Commun (Camb)       Date:  2017-11-16       Impact factor: 6.222

Review 10.  How close are we to complete annotation of metabolomes?

Authors:  Mark R Viant; Irwin J Kurland; Martin R Jones; Warwick B Dunn
Journal:  Curr Opin Chem Biol       Date:  2017-01-21       Impact factor: 8.822

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.