Literature DB >> 22965049

An accelerated workflow for untargeted metabolomics using the METLIN database.

Ralf Tautenhahn1, Kevin Cho, Winnie Uritboonthai, Zhengjiang Zhu, Gary J Patti, Gary Siuzdak.   

Abstract

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Year:  2012        PMID： 22965049      PMCID： PMC3666346          DOI： 10.1038/nbt.2348

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  9 in total

1.  MassBank: a public repository for sharing mass spectral data for life sciences.

Authors:  Hisayuki Horai; Masanori Arita; Shigehiko Kanaya; Yoshito Nihei; Tasuku Ikeda; Kazuhiro Suwa; Yuya Ojima; Kenichi Tanaka; Satoshi Tanaka; Ken Aoshima; Yoshiya Oda; Yuji Kakazu; Miyako Kusano; Takayuki Tohge; Fumio Matsuda; Yuji Sawada; Masami Yokota Hirai; Hiroki Nakanishi; Kazutaka Ikeda; Naoshige Akimoto; Takashi Maoka; Hiroki Takahashi; Takeshi Ara; Nozomu Sakurai; Hideyuki Suzuki; Daisuke Shibata; Steffen Neumann; Takashi Iida; Ken Tanaka; Kimito Funatsu; Fumito Matsuura; Tomoyoshi Soga; Ryo Taguchi; Kazuki Saito; Takaaki Nishioka
Journal:  J Mass Spectrom       Date:  2010-07       Impact factor: 1.982

2.  XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification.

Authors:  Colin A Smith; Elizabeth J Want; Grace O'Maille; Ruben Abagyan; Gary Siuzdak
Journal:  Anal Chem       Date:  2006-02-01       Impact factor: 6.986

3.  X-Rank: a robust algorithm for small molecule identification using tandem mass spectrometry.

Authors:  Roman Mylonas; Yann Mauron; Alexandre Masselot; Pierre-Alain Binz; Nicolas Budin; Marc Fathi; Véronique Viette; Denis F Hochstrasser; Frederique Lisacek
Journal:  Anal Chem       Date:  2009-09-15       Impact factor: 6.986

4.  Metabolomics implicates altered sphingolipids in chronic pain of neuropathic origin.

Authors:  Gary J Patti; Oscar Yanes; Leah P Shriver; Jean-Phillipe Courade; Ralf Tautenhahn; Marianne Manchester; Gary Siuzdak
Journal:  Nat Chem Biol       Date:  2012-01-22       Impact factor: 15.040

5.  METLIN: a metabolite mass spectral database.

Authors:  Colin A Smith; Grace O'Maille; Elizabeth J Want; Chuan Qin; Sunia A Trauger; Theodore R Brandon; Darlene E Custodio; Ruben Abagyan; Gary Siuzdak
Journal:  Ther Drug Monit       Date:  2005-12       Impact factor: 3.681

6.  Expanding coverage of the metabolome for global metabolite profiling.

Authors:  Oscar Yanes; Ralf Tautenhahn; Gary J Patti; Gary Siuzdak
Journal:  Anal Chem       Date:  2011-02-17       Impact factor: 6.986

7.  Metabolic oxidation regulates embryonic stem cell differentiation.

Authors:  Oscar Yanes; Julie Clark; Diana M Wong; Gary J Patti; Antonio Sánchez-Ruiz; H Paul Benton; Sunia A Trauger; Caroline Desponts; Sheng Ding; Gary Siuzdak
Journal:  Nat Chem Biol       Date:  2010-05-02       Impact factor: 15.040

8.  LMSD: LIPID MAPS structure database.

Authors:  Manish Sud; Eoin Fahy; Dawn Cotter; Alex Brown; Edward A Dennis; Christopher K Glass; Alfred H Merrill; Robert C Murphy; Christian R H Raetz; David W Russell; Shankar Subramaniam
Journal:  Nucleic Acids Res       Date:  2006-11-10       Impact factor: 16.971

9.  HMDB: a knowledgebase for the human metabolome.

Authors:  David S Wishart; Craig Knox; An Chi Guo; Roman Eisner; Nelson Young; Bijaya Gautam; David D Hau; Nick Psychogios; Edison Dong; Souhaila Bouatra; Rupasri Mandal; Igor Sinelnikov; Jianguo Xia; Leslie Jia; Joseph A Cruz; Emilia Lim; Constance A Sobsey; Savita Shrivastava; Paul Huang; Philip Liu; Lydia Fang; Jun Peng; Ryan Fradette; Dean Cheng; Dan Tzur; Melisa Clements; Avalyn Lewis; Andrea De Souza; Azaret Zuniga; Margot Dawe; Yeping Xiong; Derrick Clive; Russ Greiner; Alsu Nazyrova; Rustem Shaykhutdinov; Liang Li; Hans J Vogel; Ian Forsythe
Journal:  Nucleic Acids Res       Date:  2008-10-25       Impact factor: 16.971
  9 in total
  164 in total

1.  Winners of CASMI2013: Automated Tools and Challenge Data.

Authors:  Takaaki Nishioka; Takeshi Kasama; Tomoya Kinumi; Hidefumi Makabe; Fumio Matsuda; Daisuke Miura; Masahiro Miyashita; Takemichi Nakamura; Ken Tanaka; Atsushi Yamamoto
Journal:  Mass Spectrom (Tokyo)       Date:  2014-09-02

2.  In silico enzymatic synthesis of a 400,000 compound biochemical database for nontargeted metabolomics.

Authors:  Lochana C Menikarachchi; Dennis W Hill; Mai A Hamdalla; Ion I Mandoiu; David F Grant
Journal:  J Chem Inf Model       Date:  2013-09-12       Impact factor: 4.956

3.  Comparative metabolic profiling of mce1 operon mutant vs wild-type Mycobacterium tuberculosis strains.

Authors:  Adriano Queiroz; Daniel Medina-Cleghorn; Olivera Marjanovic; Daniel K Nomura; Lee W Riley
Journal:  Pathog Dis       Date:  2015-08-28       Impact factor: 3.166

Review 4.  Cell metabolomics.

Authors:  Aihua Zhang; Hui Sun; Hongying Xu; Shi Qiu; Xijun Wang
Journal:  OMICS       Date:  2013-08-29

5.  Metabolomics activity screening for identifying metabolites that modulate phenotype.

Authors:  Carlos Guijas; J Rafael Montenegro-Burke; Benedikt Warth; Mary E Spilker; Gary Siuzdak
Journal:  Nat Biotechnol       Date:  2018-04-05       Impact factor: 54.908

6.  Metabolomics technology and bioinformatics for precision medicine.

Authors:  Rajeev K Azad; Vladimir Shulaev
Journal:  Brief Bioinform       Date:  2019-11-27       Impact factor: 11.622

7.  Post-acquisition data processing for the screening of transformation products of different organic contaminants. Two-year monitoring of river water using LC-ESI-QTOF-MS and GCxGC-EI-TOF-MS.

Authors:  S Herrera López; M M Ulaszewska; M D Hernando; M J Martínez Bueno; M J Gómez; A R Fernández-Alba
Journal:  Environ Sci Pollut Res Int       Date:  2014-06-22       Impact factor: 4.223

Review 8.  After the feature presentation: technologies bridging untargeted metabolomics and biology.

Authors:  Kevin Cho; Nathaniel G Mahieu; Stephen L Johnson; Gary J Patti
Journal:  Curr Opin Biotechnol       Date:  2014-05-06       Impact factor: 9.740

9.  In Situ Microprobe Single-Cell Capillary Electrophoresis Mass Spectrometry: Metabolic Reorganization in Single Differentiating Cells in the Live Vertebrate (Xenopus laevis) Embryo.

Authors:  Rosemary M Onjiko; Erika P Portero; Sally A Moody; Peter Nemes
Journal:  Anal Chem       Date:  2017-05-01       Impact factor: 6.986

Review 10.  An overview of renal metabolomics.

Authors:  Sahir Kalim; Eugene P Rhee
Journal:  Kidney Int       Date:  2016-09-28       Impact factor: 10.612
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