Literature DB >> 28213207

Epimetabolites: discovering metabolism beyond building and burning.

Megan R Showalter1, Tomas Cajka1, Oliver Fiehn2.   

Abstract

Enzymatic transformations of primary, canonical metabolites generate active biomolecules that regulate important cellular and physiological processes. Roles include regulation of histone demethylation in epigenetics, inflammation in tissue injury, insulin sensitivity, cancer cell invasion, stem cell pluripotency status, inhibition of nitric oxide signaling and others. Such modified compounds, defined as epimetabolites, have functions distinct from classic hormones as well as removed from generic anabolism and catabolism. Epimetabolites are discovered by untargeted metabolomics using liquid- or gas chromatography-high resolution mass spectrometry and structurally annotated by in-silico fragmentation prediction tools. Their specific biological functions are subsequently investigated by targeted metabolomics methods.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Year:  2017        PMID: 28213207      PMCID: PMC5850962          DOI: 10.1016/j.cbpa.2017.01.012

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  48 in total

1.  Illuminating the dark matter in metabolomics.

Authors:  Ricardo R da Silva; Pieter C Dorrestein; Robert A Quinn
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-01       Impact factor: 11.205

Review 2.  Plant phenolics: recent advances on their biosynthesis, genetics, and ecophysiology.

Authors:  Véronique Cheynier; Gilles Comte; Kevin M Davies; Vincenzo Lattanzio; Stefan Martens
Journal:  Plant Physiol Biochem       Date:  2013-05-28       Impact factor: 4.270

Review 3.  Plasticity of specialized metabolism as mediated by dynamic metabolons.

Authors:  Tomas Laursen; Birger Lindberg Møller; Jean-Etienne Bassard
Journal:  Trends Plant Sci       Date:  2014-11-27       Impact factor: 18.313

4.  Hydrogen Rearrangement Rules: Computational MS/MS Fragmentation and Structure Elucidation Using MS-FINDER Software.

Authors:  Hiroshi Tsugawa; Tobias Kind; Ryo Nakabayashi; Daichi Yukihira; Wataru Tanaka; Tomas Cajka; Kazuki Saito; Oliver Fiehn; Masanori Arita
Journal:  Anal Chem       Date:  2016-08-04       Impact factor: 6.986

5.  γ-Butyrobetaine is a proatherogenic intermediate in gut microbial metabolism of L-carnitine to TMAO.

Authors:  Robert A Koeth; Bruce S Levison; Miranda K Culley; Jennifer A Buffa; Zeneng Wang; Jill C Gregory; Elin Org; Yuping Wu; Lin Li; Jonathan D Smith; W H Wilson Tang; Joseph A DiDonato; Aldons J Lusis; Stanley L Hazen
Journal:  Cell Metab       Date:  2014-11-04       Impact factor: 27.287

6.  Transformation by the (R)-enantiomer of 2-hydroxyglutarate linked to EGLN activation.

Authors:  Peppi Koivunen; Sungwoo Lee; Christopher G Duncan; Giselle Lopez; Gang Lu; Shakti Ramkissoon; Julie A Losman; Päivi Joensuu; Ulrich Bergmann; Stefan Gross; Jeremy Travins; Samuel Weiss; Ryan Looper; Keith L Ligon; Roel G W Verhaak; Hai Yan; William G Kaelin
Journal:  Nature       Date:  2012-02-15       Impact factor: 49.962

7.  Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease.

Authors:  Zeneng Wang; Elizabeth Klipfell; Brian J Bennett; Robert Koeth; Bruce S Levison; Brandon Dugar; Ariel E Feldstein; Earl B Britt; Xiaoming Fu; Yoon-Mi Chung; Yuping Wu; Phil Schauer; Jonathan D Smith; Hooman Allayee; W H Wilson Tang; Joseph A DiDonato; Aldons J Lusis; Stanley L Hazen
Journal:  Nature       Date:  2011-04-07       Impact factor: 49.962

8.  The common feature of leukemia-associated IDH1 and IDH2 mutations is a neomorphic enzyme activity converting alpha-ketoglutarate to 2-hydroxyglutarate.

Authors:  Patrick S Ward; Jay Patel; David R Wise; Omar Abdel-Wahab; Bryson D Bennett; Hilary A Coller; Justin R Cross; Valeria R Fantin; Cyrus V Hedvat; Alexander E Perl; Joshua D Rabinowitz; Martin Carroll; Shinsan M Su; Kim A Sharp; Ross L Levine; Craig B Thompson
Journal:  Cancer Cell       Date:  2010-02-18       Impact factor: 38.585

9.  Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm.

Authors:  Tobias Kind; Oliver Fiehn
Journal:  BMC Bioinformatics       Date:  2006-04-28       Impact factor: 3.169

10.  CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra.

Authors:  Felicity Allen; Allison Pon; Michael Wilson; Russ Greiner; David Wishart
Journal:  Nucleic Acids Res       Date:  2014-06-03       Impact factor: 16.971

View more
  19 in total

1.  Primed mesenchymal stem cells package exosomes with metabolites associated with immunomodulation.

Authors:  Megan R Showalter; Benjamin Wancewicz; Oliver Fiehn; Joehleen A Archard; Shannon Clayton; Joseph Wagner; Peter Deng; Julian Halmai; Kyle D Fink; Gerhard Bauer; Brian Fury; Nicholas H Perotti; Michelle Apperson; Janelle Butters; Peter Belafsky; Gregory Farwell; Maggie Kuhn; Jan A Nolta; Johnathon D Anderson
Journal:  Biochem Biophys Res Commun       Date:  2019-03-26       Impact factor: 3.575

Review 2.  Chemical Discovery in the Era of Metabolomics.

Authors:  Miriam Sindelar; Gary J Patti
Journal:  J Am Chem Soc       Date:  2020-05-11       Impact factor: 15.419

3.  Using Accurate Mass Gas Chromatography-Mass Spectrometry with the MINE Database for Epimetabolite Annotation.

Authors:  Zijuan Lai; Tobias Kind; Oliver Fiehn
Journal:  Anal Chem       Date:  2017-09-22       Impact factor: 6.986

Review 4.  Mass spectrometry-based metabolomics in microbiome investigations.

Authors:  Anelize Bauermeister; Helena Mannochio-Russo; Letícia V Costa-Lotufo; Alan K Jarmusch; Pieter C Dorrestein
Journal:  Nat Rev Microbiol       Date:  2021-09-22       Impact factor: 78.297

Review 5.  Integrating bioinformatics approaches for a comprehensive interpretation of metabolomics datasets.

Authors:  Dinesh Kumar Barupal; Sili Fan; Oliver Fiehn
Journal:  Curr Opin Biotechnol       Date:  2018-02-06       Impact factor: 9.740

6.  Exposure to DMSO during infancy alters neurochemistry, social interactions, and brain morphology in long-evans rats.

Authors:  Zachary Rabow; Taryn Morningstar; Megan Showalter; Hailey Heil; Krista Thongphanh; Sili Fan; Joanne Chan; Verónica Martínez-Cerdeño; Robert Berman; David Zagzag; Evgeny Nudler; Oliver Fiehn; Mirna Lechpammer
Journal:  Brain Behav       Date:  2021-04-10       Impact factor: 2.708

7.  High-Throughput Non-targeted Chemical Structure Identification Using Gas-Phase Infrared Spectra.

Authors:  Erandika Karunaratne; Dennis W Hill; Philipp Pracht; José A Gascón; Stefan Grimme; David F Grant
Journal:  Anal Chem       Date:  2021-07-21       Impact factor: 8.008

Review 8.  Metabolomics in cancer research and emerging applications in clinical oncology.

Authors:  Daniel R Schmidt; Rutulkumar Patel; David G Kirsch; Caroline A Lewis; Matthew G Vander Heiden; Jason W Locasale
Journal:  CA Cancer J Clin       Date:  2021-05-13       Impact factor: 286.130

9.  Obesogenic diets alter metabolism in mice.

Authors:  Megan R Showalter; Eric B Nonnecke; A L Linderholm; Tomas Cajka; Michael R Sa; Bo Lönnerdal; Nicholas J Kenyon; Oliver Fiehn
Journal:  PLoS One       Date:  2018-01-11       Impact factor: 3.240

10.  Chemical Similarity Enrichment Analysis (ChemRICH) as alternative to biochemical pathway mapping for metabolomic datasets.

Authors:  Dinesh Kumar Barupal; Oliver Fiehn
Journal:  Sci Rep       Date:  2017-11-06       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.