Literature DB >> 27552081

Resolution advances in cryo-EM enable application to drug discovery.

Sriram Subramaniam1, Lesley A Earl2, Veronica Falconieri2, Jacqueline Ls Milne2, Edward H Egelman3.   

Abstract

The prospect that the structures of protein assemblies, small and large, can be determined using cryo-electron microscopy (cryo-EM) is beginning to transform the landscape of structural biology and cell biology. Great progress is being made in determining 3D structures of biological assemblies ranging from icosahedral viruses and helical arrays to small membrane proteins and protein complexes. Here, we review recent advances in this field, focusing especially on the emerging use of cryo-EM in mapping the binding of drugs and inhibitors to protein targets, an application that requires structure determination at the highest possible resolutions. We discuss methods used to evaluate the information contained in cryo-EM density maps and consider strengths and weaknesses of approaches currently used to measure map resolution. Published by Elsevier Ltd.

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Year:  2016        PMID: 27552081      PMCID: PMC5154827          DOI: 10.1016/j.sbi.2016.07.009

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  56 in total

1.  Virology. A virus that infects a hyperthermophile encapsidates A-form DNA.

Authors:  Frank DiMaio; Xiong Yu; Elena Rensen; Mart Krupovic; David Prangishvili; Edward H Egelman
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

2.  Structure of Sputnik, a virophage, at 3.5-Å resolution.

Authors:  Xinzheng Zhang; Siyang Sun; Ye Xiang; Jimson Wong; Thomas Klose; Didier Raoult; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

3.  Cryo-EM Structures of the Magnesium Channel CorA Reveal Symmetry Break upon Gating.

Authors:  Doreen Matthies; Olivier Dalmas; Mario J Borgnia; Pawel K Dominik; Alan Merk; Prashant Rao; Bharat G Reddy; Shahidul Islam; Alberto Bartesaghi; Eduardo Perozo; Sriram Subramaniam
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

4.  Structure of the yeast mitochondrial large ribosomal subunit.

Authors:  Alexey Amunts; Alan Brown; Xiao-Chen Bai; Jose L Llácer; Tanweer Hussain; Paul Emsley; Fei Long; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

5.  Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.

Authors:  R Henderson; J M Baldwin; T A Ceska; F Zemlin; E Beckmann; K H Downing
Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

6.  Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.

Authors:  Zhen Yan; Xiaochen Bai; Chuangye Yan; Jianping Wu; Zhangqiang Li; Tian Xie; Wei Peng; Changcheng Yin; Xueming Li; Sjors H W Scheres; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2014-12-15       Impact factor: 49.962

7.  Structure- and function-based design of Plasmodium-selective proteasome inhibitors.

Authors:  Hao Li; Anthony J O'Donoghue; Wouter A van der Linden; Stanley C Xie; Euna Yoo; Ian T Foe; Leann Tilley; Charles S Craik; Paula C A da Fonseca; Matthew Bogyo
Journal:  Nature       Date:  2016-02-11       Impact factor: 49.962

8.  Cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer.

Authors:  Alexandra C Walls; M Alejandra Tortorici; Berend-Jan Bosch; Brandon Frenz; Peter J M Rottier; Frank DiMaio; Félix A Rey; David Veesler
Journal:  Nature       Date:  2016-02-08       Impact factor: 49.962

9.  Pre-fusion structure of a human coronavirus spike protein.

Authors:  Robert N Kirchdoerfer; Christopher A Cottrell; Nianshuang Wang; Jesper Pallesen; Hadi M Yassine; Hannah L Turner; Kizzmekia S Corbett; Barney S Graham; Jason S McLellan; Andrew B Ward
Journal:  Nature       Date:  2016-03-03       Impact factor: 49.962

10.  TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action.

Authors:  Yuan Gao; Erhu Cao; David Julius; Yifan Cheng
Journal:  Nature       Date:  2016-05-18       Impact factor: 49.962

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  40 in total

Review 1.  Structure of IP3R channel: high-resolution insights from cryo-EM.

Authors:  Mariah R Baker; Guizhen Fan; Irina I Serysheva
Journal:  Curr Opin Struct Biol       Date:  2017-06-12       Impact factor: 6.809

Review 2.  Microbiology catches the cryo-EM bug.

Authors:  Lesley A Earl; Veronica Falconieri; Sriram Subramaniam
Journal:  Curr Opin Microbiol       Date:  2018-04-12       Impact factor: 7.934

3.  On the appearance of carboxylates in electrostatic potential maps.

Authors:  Jimin Wang
Journal:  Protein Sci       Date:  2016-12-26       Impact factor: 6.725

4.  Refined Cryo-EM Structure of the T4 Tail Tube: Exploring the Lowest Dose Limit.

Authors:  Weili Zheng; Fengbin Wang; Nicholas M I Taylor; Ricardo C Guerrero-Ferreira; Petr G Leiman; Edward H Egelman
Journal:  Structure       Date:  2017-07-27       Impact factor: 5.006

5.  A novel storage system for cryoEM samples.

Authors:  Giovanna Scapin; Winifred W Prosise; Michael K Wismer; Corey Strickland
Journal:  J Struct Biol       Date:  2017-04-19       Impact factor: 2.867

Review 6.  The impact of structural biology in medicine illustrated with four case studies.

Authors:  Tiancen Hu; Elizabeth R Sprague; Michelle Fodor; Travis Stams; Kirk L Clark; Sandra W Cowan-Jacob
Journal:  J Mol Med (Berl)       Date:  2017-07-01       Impact factor: 4.599

7.  Breaking the symmetry of a viral capsid.

Authors:  Marc C Morais
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-03       Impact factor: 11.205

8.  On the interpretation of electron microscopic maps of biological macromolecules.

Authors:  Jimin Wang; Peter B Moore
Journal:  Protein Sci       Date:  2016-10-15       Impact factor: 6.725

9.  Cryo-electron microscopy shapes up.

Authors:  Monya Baker
Journal:  Nature       Date:  2018-09       Impact factor: 49.962

10.  High-Resolution Cryo-EM Maps and Models: A Crystallographer's Perspective.

Authors:  Alexander Wlodawer; Mi Li; Zbigniew Dauter
Journal:  Structure       Date:  2017-08-31       Impact factor: 5.006

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