Literature DB >> 27543495

How cryo-electron microscopy and X-ray crystallography complement each other.

Hong-Wei Wang1,2, Jia-Wei Wang1.   

Abstract

With the ability to resolve structures of macromolecules at atomic resolution, X-ray crystallography has been the most powerful tool in modern structural biology. At the same time, recent technical improvements have triggered a resolution revolution in the single particle cryo-EM method. While the two methods are different in many respects, from sample preparation to structure determination, they both have the power to solve macromolecular structures at atomic resolution. It is important to understand the unique advantages and caveats of the two methods in solving structures and to appreciate the complementary nature of the two methods in structural biology. In this review we provide some examples, and discuss how X-ray crystallography and cryo-EM can be combined in deciphering structures of macromolecules for our full understanding of their biological mechanisms.
© 2016 The Protein Society.

Keywords:  X-ray and electron scattering; X-ray crystallography; cryo-EM; protein structure determination; structural biology; structure determination methods

Mesh:

Year:  2016        PMID: 27543495      PMCID: PMC5192981          DOI: 10.1002/pro.3022

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  32 in total

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Authors:  W Wriggers; R A Milligan; J A McCammon
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Authors:  M G Rossmann
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-10

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Authors:  M G Rossmann; R Bernal; S V Pletnev
Journal:  J Struct Biol       Date:  2001-12       Impact factor: 2.867

4.  Finding rigid bodies in protein structures: Application to flexible fitting into cryoEM maps.

Authors:  Arun Prasad Pandurangan; Maya Topf
Journal:  J Struct Biol       Date:  2011-11-07       Impact factor: 2.867

Review 5.  A review of techniques for maximizing diffraction from a protein crystal in stilla.

Authors:  Janet Newman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

6.  Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 Å.

Authors:  Yu Hirano; Kazuki Takeda; Kunio Miki
Journal:  Nature       Date:  2016-05-18       Impact factor: 49.962

7.  Cryo-EM structure of influenza virus RNA polymerase complex at 4.3 Å resolution.

Authors:  Shenghai Chang; Dapeng Sun; Huanhuan Liang; Jia Wang; Jun Li; Lu Guo; Xiangli Wang; Chengcheng Guan; Bhargavi M Boruah; Lingmin Yuan; Feng Feng; Mingrui Yang; Lulan Wang; Yao Wang; Justyna Wojdyla; Lanjuan Li; Jiawei Wang; Meitian Wang; Genhong Cheng; Hong-Wei Wang; Yingfang Liu
Journal:  Mol Cell       Date:  2015-01-22       Impact factor: 17.970

8.  Structural insight into cap-snatching and RNA synthesis by influenza polymerase.

Authors:  Stefan Reich; Delphine Guilligay; Alexander Pflug; Hélène Malet; Imre Berger; Thibaut Crépin; Darren Hart; Thomas Lunardi; Max Nanao; Rob W H Ruigrok; Stephen Cusack
Journal:  Nature       Date:  2014-11-19       Impact factor: 49.962

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Authors:  Garry L Taylor
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Structure of the rabbit ryanodine receptor RyR1 at near-atomic resolution.

Authors:  Zhen Yan; Xiaochen Bai; Chuangye Yan; Jianping Wu; Zhangqiang Li; Tian Xie; Wei Peng; Changcheng Yin; Xueming Li; Sjors H W Scheres; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2014-12-15       Impact factor: 49.962

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  27 in total

1.  Structural analyses of an RNA stability element interacting with poly(A).

Authors:  Seyed-Fakhreddin Torabi; Yen-Lin Chen; Kaiming Zhang; Jimin Wang; Suzanne J DeGregorio; Anand T Vaidya; Zhaoming Su; Suzette A Pabit; Wah Chiu; Lois Pollack; Joan A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-06       Impact factor: 11.205

Review 2.  Dawning of a new era in TRP channel structural biology by cryo-electron microscopy.

Authors:  M Gregor Madej; Christine M Ziegler
Journal:  Pflugers Arch       Date:  2018-01-17       Impact factor: 3.657

3.  Single-particle analysis of urea amidolyase reveals its molecular mechanism.

Authors:  Ying Liu; Bin Yuan; Liang Peng; Jing Zhao; Bin Cheng; Yuhua Huang; Xinxing Zheng; Yuerong Zhou; Song Xiang; Li Zhu; Yi Wu
Journal:  Protein Sci       Date:  2020-03-10       Impact factor: 6.725

4.  Quantitative mass imaging of single biological macromolecules.

Authors:  Gavin Young; Nikolas Hundt; Daniel Cole; Adam Fineberg; Joanna Andrecka; Andrew Tyler; Anna Olerinyova; Ayla Ansari; Erik G Marklund; Miranda P Collier; Shane A Chandler; Olga Tkachenko; Joel Allen; Max Crispin; Neil Billington; Yasuharu Takagi; James R Sellers; Cédric Eichmann; Philipp Selenko; Lukas Frey; Roland Riek; Martin R Galpin; Weston B Struwe; Justin L P Benesch; Philipp Kukura
Journal:  Science       Date:  2018-04-27       Impact factor: 47.728

5.  Sub-3-Å cryo-EM structure of RNA enabled by engineered homomeric self-assembly.

Authors:  Di Liu; François A Thélot; Joseph A Piccirilli; Maofu Liao; Peng Yin
Journal:  Nat Methods       Date:  2022-05-02       Impact factor: 28.547

6.  Measuring Cysteine Exposure in Unfolded Proteins with Tetraphenylethene Maleimide and its Analogs.

Authors:  Shouxiang Zhang; Yuning Hong
Journal:  Methods Mol Biol       Date:  2022

Review 7.  Molecular interactions at the colchicine binding site in tubulin: An X-ray crystallography perspective.

Authors:  Jiaxing Wang; Duane D Miller; Wei Li
Journal:  Drug Discov Today       Date:  2021-12-08       Impact factor: 7.851

8.  Synchrotron Radiation as a Tool for Macromolecular X-Ray Crystallography: a XXI Century Perspective.

Authors:  Marek Grabowski; David R Cooper; Dariusz Brzezinski; Joanna M Macnar; Ivan G Shabalin; Marcin Cymborowski; Zbyszek Otwinowski; Wladek Minor
Journal:  Nucl Instrum Methods Phys Res B       Date:  2021-01-05       Impact factor: 1.377

9.  A 10-year meta-analysis of membrane protein structural biology: Detergents, membrane mimetics, and structure determination techniques.

Authors:  Brendon C Choy; Rosemary J Cater; Filippo Mancia; Edward E Pryor
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-12-17       Impact factor: 3.747

Review 10.  17O NMR Spectroscopy: A Novel Probe for Characterizing Protein Structure and Folding.

Authors:  Srinivasan Muniyappan; Yuxi Lin; Young-Ho Lee; Jin Hae Kim
Journal:  Biology (Basel)       Date:  2021-05-21
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