Literature DB >> 29700264

Quantitative mass imaging of single biological macromolecules.

Gavin Young1, Nikolas Hundt1, Daniel Cole1, Adam Fineberg1, Joanna Andrecka1, Andrew Tyler1, Anna Olerinyova1, Ayla Ansari1, Erik G Marklund2, Miranda P Collier1, Shane A Chandler1, Olga Tkachenko1, Joel Allen3, Max Crispin3, Neil Billington4, Yasuharu Takagi4, James R Sellers4, Cédric Eichmann5, Philipp Selenko5, Lukas Frey6, Roland Riek6,7, Martin R Galpin1, Weston B Struwe1, Justin L P Benesch8, Philipp Kukura8.   

Abstract

The cellular processes underpinning life are orchestrated by proteins and their interactions. The associated structural and dynamic heterogeneity, despite being key to function, poses a fundamental challenge to existing analytical and structural methodologies. We used interferometric scattering microscopy to quantify the mass of single biomolecules in solution with 2% sequence mass accuracy, up to 19-kilodalton resolution, and 1-kilodalton precision. We resolved oligomeric distributions at high dynamic range, detected small-molecule binding, and mass-imaged proteins with associated lipids and sugars. These capabilities enabled us to characterize the molecular dynamics of processes as diverse as glycoprotein cross-linking, amyloidogenic protein aggregation, and actin polymerization. Interferometric scattering mass spectrometry allows spatiotemporally resolved measurement of a broad range of biomolecular interactions, one molecule at a time.
Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2018        PMID: 29700264      PMCID: PMC6103225          DOI: 10.1126/science.aar5839

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  29 in total

1.  Principles of assembly reveal a periodic table of protein complexes.

Authors:  Sebastian E Ahnert; Joseph A Marsh; Helena Hernández; Carol V Robinson; Sarah A Teichmann
Journal:  Science       Date:  2015-12-11       Impact factor: 47.728

2.  Global N-Glycan Site Occupancy of HIV-1 gp120 by Metabolic Engineering and High-Resolution Intact Mass Spectrometry.

Authors:  Weston B Struwe; Alexandra Stuckmann; Anna-Janina Behrens; Kevin Pagel; Max Crispin
Journal:  ACS Chem Biol       Date:  2017-01-09       Impact factor: 5.100

Review 3.  Actin assembly mechanisms at a glance.

Authors:  Klemens Rottner; Jan Faix; Sven Bogdan; Stefan Linder; Eugen Kerkhoff
Journal:  J Cell Sci       Date:  2017-10-15       Impact factor: 5.285

4.  Binding Site Geometry and Subdomain Valency Control Effects of Neutralizing Lectins on HIV-1 Viral Particles.

Authors:  Sabrina Lusvarghi; Katheryn Lohith; Jeanne Morin-Leisk; Rodolfo Ghirlando; Jenny E Hinshaw; Carole A Bewley
Journal:  ACS Infect Dis       Date:  2016-10-03       Impact factor: 5.084

Review 5.  From macroscopic measurements to microscopic mechanisms of protein aggregation.

Authors:  Samuel I A Cohen; Michele Vendruscolo; Christopher M Dobson; Tuomas P J Knowles
Journal:  J Mol Biol       Date:  2012-03-08       Impact factor: 5.469

6.  Lipid vesicles trigger α-synuclein aggregation by stimulating primary nucleation.

Authors:  Céline Galvagnion; Alexander K Buell; Georg Meisl; Thomas C T Michaels; Michele Vendruscolo; Tuomas P J Knowles; Christopher M Dobson
Journal:  Nat Chem Biol       Date:  2015-02-02       Impact factor: 15.040

7.  Probing cellular protein complexes using single-molecule pull-down.

Authors:  Ankur Jain; Ruijie Liu; Biswarathan Ramani; Edwin Arauz; Yuji Ishitsuka; Kaushik Ragunathan; Jeehae Park; Jie Chen; Yang K Xiang; Taekjip Ha
Journal:  Nature       Date:  2011-05-26       Impact factor: 49.962

8.  Global site-specific N-glycosylation analysis of HIV envelope glycoprotein.

Authors:  Liwei Cao; Jolene K Diedrich; Daniel W Kulp; Matthias Pauthner; Lin He; Sung-Kyu Robin Park; Devin Sok; Ching Yao Su; Claire M Delahunty; Sergey Menis; Raiees Andrabi; Javier Guenaga; Erik Georgeson; Michael Kubitz; Yumiko Adachi; Dennis R Burton; William R Schief; John R Yates; James C Paulson
Journal:  Nat Commun       Date:  2017-03-28       Impact factor: 14.919

9.  Label-free, all-optical detection, imaging, and tracking of a single protein.

Authors:  J Ortega Arroyo; J Andrecka; K M Spillane; N Billington; Y Takagi; J R Sellers; P Kukura
Journal:  Nano Lett       Date:  2014-03-21       Impact factor: 11.189

10.  An improved surface passivation method for single-molecule studies.

Authors:  Boyang Hua; Kyu Young Han; Ruobo Zhou; Hajin Kim; Xinghua Shi; Sanjaya C Abeysirigunawardena; Ankur Jain; Digvijay Singh; Vasudha Aggarwal; Sarah A Woodson; Taekjip Ha
Journal:  Nat Methods       Date:  2014-10-12       Impact factor: 28.547

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  92 in total

1.  What Could Go Wrong? A Practical Guide to Single-Particle Cryo-EM: From Biochemistry to Atomic Models.

Authors:  Michael A Cianfrocco; Elizabeth H Kellogg
Journal:  J Chem Inf Model       Date:  2020-03-09       Impact factor: 4.956

2.  Watching microtubules grow one tubulin at a time.

Authors:  Nikita Gudimchuk; Antonina Roll-Mecak
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-25       Impact factor: 11.205

3.  Measuring the affinity of protein-protein interactions on a single-molecule level by mass photometry.

Authors:  Di Wu; Grzegorz Piszczek
Journal:  Anal Biochem       Date:  2020-01-07       Impact factor: 3.365

4.  Single-molecule calorimeter and free energy landscape.

Authors:  Yi Wang; Zhuodong Tang; Hong-Yuan Chen; Wei Wang; Nongjian Tao; Hui Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 11.205

5.  Characterization of CaMKIIα holoenzyme stability.

Authors:  Ana P Torres-Ocampo; Can Özden; Alexandra Hommer; Anne Gardella; Emily Lapinskas; Alfred Samkutty; Edward Esposito; Scott C Garman; Margaret M Stratton
Journal:  Protein Sci       Date:  2020-05-02       Impact factor: 6.725

6.  Measuring Stepwise Binding of Thermally Fluctuating Particles to Cell Membranes without Fluorescence.

Authors:  Alexander Rohrbach; Tim Meyer; Ernst H K Stelzer; Holger Kress
Journal:  Biophys J       Date:  2020-03-14       Impact factor: 4.033

Review 7.  Critical Review: digital resolution biomolecular sensing for diagnostics and life science research.

Authors:  Qinglan Huang; Nantao Li; Hanyuan Zhang; Congnyu Che; Fu Sun; Yanyu Xiong; Taylor D Canady; Brian T Cunningham
Journal:  Lab Chip       Date:  2020-07-23       Impact factor: 6.799

8.  Casposase structure and the mechanistic link between DNA transposition and spacer acquisition by CRISPR-Cas.

Authors:  Alison B Hickman; Shweta Kailasan; Pavol Genzor; Astrid D Haase; Fred Dyda
Journal:  Elife       Date:  2020-01-08       Impact factor: 8.140

Review 9.  Identification and Quantification of Proteoforms by Mass Spectrometry.

Authors:  Leah V Schaffer; Robert J Millikin; Rachel M Miller; Lissa C Anderson; Ryan T Fellers; Ying Ge; Neil L Kelleher; Richard D LeDuc; Xiaowen Liu; Samuel H Payne; Liangliang Sun; Paul M Thomas; Trisha Tucholski; Zhe Wang; Si Wu; Zhijie Wu; Dahang Yu; Michael R Shortreed; Lloyd M Smith
Journal:  Proteomics       Date:  2019-05       Impact factor: 3.984

10.  Rapid Determination of Antibody-Antigen Affinity by Mass Photometry.

Authors:  Di Wu; Grzegorz Piszczek
Journal:  J Vis Exp       Date:  2021-02-08       Impact factor: 1.355

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