Literature DB >> 27533243

Length-adaptive graph search for automatic segmentation of pathological features in optical coherence tomography images.

Brenton Keller1, David Cunefare1, Dilraj S Grewal2, Tamer H Mahmoud2, Joseph A Izatt3, Sina Farsiu3.   

Abstract

We introduce a metric in graph search and demonstrate its application for segmenting retinal optical coherence tomography (OCT) images of macular pathology. Our proposed “adjusted mean arc length” (AMAL) metric is an adaptation of the lowest mean arc length search technique for automated OCT segmentation. We compare this method to Dijkstra’s shortest path algorithm, which we utilized previously in our popular graph theory and dynamic programming segmentation technique. As an illustrative example, we show that AMAL-based length-adaptive segmentation outperforms the shortest path in delineating the retina/vitreous boundary of patients with full-thickness macular holes when compared with expert manual grading.

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Year:  2016        PMID: 27533243      PMCID: PMC4963530          DOI: 10.1117/1.JBO.21.7.076015

Source DB:  PubMed          Journal:  J Biomed Opt        ISSN: 1083-3668            Impact factor:   3.170


  35 in total

1.  Automatic segmentation of the optic nerve head for deformation measurements in video rate optical coherence tomography.

Authors:  Maribel Hidalgo-Aguirre; Julian Gitelman; Mark Richard Lesk; Santiago Costantino
Journal:  J Biomed Opt       Date:  2015-11       Impact factor: 3.170

2.  Optical coherence tomography.

Authors:  D Huang; E A Swanson; C P Lin; J S Schuman; W G Stinson; W Chang; M R Hee; T Flotte; K Gregory; C A Puliafito
Journal:  Science       Date:  1991-11-22       Impact factor: 47.728

3.  A novel segmentation algorithm for volumetric analysis of macular hole boundaries identified with optical coherence tomography.

Authors:  David Xu; Alex Yuan; Peter K Kaiser; Sunil K Srivastava; Rishi P Singh; Jonathan E Sears; Daniel F Martin; Justis P Ehlers
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-01-07       Impact factor: 4.799

4.  Graph-based multi-surface segmentation of OCT data using trained hard and soft constraints.

Authors:  Pascal A Dufour; Lala Ceklic; Hannan Abdillahi; Simon Schröder; Sandro De Dzanet; Ute Wolf-Schnurrbusch; Jens Kowal
Journal:  IEEE Trans Med Imaging       Date:  2012-10-18       Impact factor: 10.048

5.  User-guided segmentation for volumetric retinal optical coherence tomography images.

Authors:  Xin Yin; Jennifer R Chao; Ruikang K Wang
Journal:  J Biomed Opt       Date:  2014-08       Impact factor: 3.170

6.  In vivo microvascular network imaging of the human retina combined with an automatic three-dimensional segmentation method.

Authors:  Shenghai Huang; Zhonglie Piao; Jiang Zhu; Fan Lu; Zhongping Chen
Journal:  J Biomed Opt       Date:  2015-07       Impact factor: 3.170

7.  Macular segmentation with optical coherence tomography.

Authors:  Hiroshi Ishikawa; Daniel M Stein; Gadi Wollstein; Siobahn Beaton; James G Fujimoto; Joel S Schuman
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-06       Impact factor: 4.799

8.  Automatic segmentation of seven retinal layers in SDOCT images congruent with expert manual segmentation.

Authors:  Stephanie J Chiu; Xiao T Li; Peter Nicholas; Cynthia A Toth; Joseph A Izatt; Sina Farsiu
Journal:  Opt Express       Date:  2010-08-30       Impact factor: 3.894

9.  Automatic segmentation of the choroid in enhanced depth imaging optical coherence tomography images.

Authors:  Jing Tian; Pina Marziliano; Mani Baskaran; Tin Aung Tun; Tin Aung
Journal:  Biomed Opt Express       Date:  2013-02-11       Impact factor: 3.732

10.  Automatic segmentation of closed-contour features in ophthalmic images using graph theory and dynamic programming.

Authors:  Stephanie J Chiu; Cynthia A Toth; Catherine Bowes Rickman; Joseph A Izatt; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2012-04-26       Impact factor: 3.732

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  11 in total

1.  Active contour method for ILM segmentation in ONH volume scans in retinal OCT.

Authors:  Kay Gawlik; Frank Hausser; Friedemann Paul; Alexander U Brandt; Ella Maria Kadas
Journal:  Biomed Opt Express       Date:  2018-11-28       Impact factor: 3.732

2.  Automatic and robust segmentation of endoscopic OCT images and optical staining.

Authors:  Jianlin Zhang; Wu Yuan; Wenxuan Liang; Shanyong Yu; Yanmei Liang; Zhiyong Xu; Yuxing Wei; Xingde Li
Journal:  Biomed Opt Express       Date:  2017-04-26       Impact factor: 3.732

3.  Effect of patch size and network architecture on a convolutional neural network approach for automatic segmentation of OCT retinal layers.

Authors:  Jared Hamwood; David Alonso-Caneiro; Scott A Read; Stephen J Vincent; Michael J Collins
Journal:  Biomed Opt Express       Date:  2018-06-11       Impact factor: 3.732

4.  Automatic segmentation of nine retinal layer boundaries in OCT images of non-exudative AMD patients using deep learning and graph search.

Authors:  Leyuan Fang; David Cunefare; Chong Wang; Robyn H Guymer; Shutao Li; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2017-04-27       Impact factor: 3.732

5.  Segmentation guided registration of wide field-of-view retinal optical coherence tomography volumes.

Authors:  José Lezama; Dibyendu Mukherjee; Ryan P McNabb; Guillermo Sapiro; Anthony N Kuo; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2016-11-01       Impact factor: 3.732

6.  Segmentation Based Sparse Reconstruction of Optical Coherence Tomography Images.

Authors:  Leyuan Fang; Shutao Li; David Cunefare; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2016-09-20       Impact factor: 10.048

7.  Statistical Models of Signal and Noise and Fundamental Limits of Segmentation Accuracy in Retinal Optical Coherence Tomography.

Authors:  Theodore B Dubose; David Cunefare; Elijah Cole; Peyman Milanfar; Joseph A Izatt; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2017-11-13       Impact factor: 10.048

8.  Choroid Segmentation of Retinal OCT Images Based on CNN Classifier and l 2-l q Fitter.

Authors:  Fang He; Rachel Ka Man Chun; Zicheng Qiu; Shijie Yu; Yun Shi; Chi Ho To; Xiaojun Chen
Journal:  Comput Math Methods Med       Date:  2021-01-15       Impact factor: 2.238

9.  Longitudinal Higher-Order OCT Assessment of Quantitative Fluid Dynamics and the Total Retinal Fluid Index in Neovascular AMD.

Authors:  Justis P Ehlers; Julie Clark; Atsuro Uchida; Natalia Figueiredo; Amy Babiuch; Katherine E Talcott; Leina Lunasco; Thuy K Le; Xiangyi Meng; Ming Hu; Jamie Reese; Sunil K Srivastava
Journal:  Transl Vis Sci Technol       Date:  2021-03-01       Impact factor: 3.283

10.  Real-time corneal segmentation and 3D needle tracking in intrasurgical OCT.

Authors:  Brenton Keller; Mark Draelos; Gao Tang; Sina Farsiu; Anthony N Kuo; Kris Hauser; Joseph A Izatt
Journal:  Biomed Opt Express       Date:  2018-05-21       Impact factor: 3.732

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