Literature DB >> 29990154

Statistical Models of Signal and Noise and Fundamental Limits of Segmentation Accuracy in Retinal Optical Coherence Tomography.

Theodore B Dubose, David Cunefare, Elijah Cole, Peyman Milanfar, Joseph A Izatt, Sina Farsiu.   

Abstract

Optical coherence tomography (OCT) has revolutionized diagnosis and prognosis of ophthalmic diseases by visualization and measurement of retinal layers. To speed up the quantitative analysis of disease biomarkers, an increasing number of automatic segmentation algorithms have been proposed to estimate the boundary locations of retinal layers. While the performance of these algorithms has significantly improved in recent years, a critical question to ask is how far we are from a theoretical limit to OCT segmentation performance. In this paper, we present the Cramèr-Rao lower bounds (CRLBs) for the problem of OCT layer segmentation. In deriving the CRLBs, we address the important problem of defining statistical models that best represent the intensity distribution in each layer of the retina. Additionally, we calculate the bounds under an optimal affine bias, reflecting the use of prior knowledge in many segmentation algorithms. Experiments using in vivo images of human retina from a commercial spectral domain OCT system are presented, showing potential for improvement of automated segmentation accuracy. Our general mathematical model can be easily adapted for virtually any OCT system. Furthermore, the statistical models of signal and noise developed in this paper can be utilized for the future improvements of OCT image denoising, reconstruction, and many other applications.

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Mesh:

Year:  2017        PMID: 29990154      PMCID: PMC6146969          DOI: 10.1109/TMI.2017.2772963

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  44 in total

1.  Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: comparison with intravascular ultrasound.

Authors:  Ik-Kyung Jang; Brett E Bouma; Dong-Heon Kang; Seung-Jung Park; Seong-Wook Park; Ki-Bae Seung; Kyu-Bo Choi; Milen Shishkov; Kelly Schlendorf; Eugene Pomerantsev; Stuart L Houser; H Thomas Aretz; Guillermo J Tearney
Journal:  J Am Coll Cardiol       Date:  2002-02-20       Impact factor: 24.094

2.  Quantitative classification of eyes with and without intermediate age-related macular degeneration using optical coherence tomography.

Authors:  Sina Farsiu; Stephanie J Chiu; Rachelle V O'Connell; Francisco A Folgar; Eric Yuan; Joseph A Izatt; Cynthia A Toth
Journal:  Ophthalmology       Date:  2013-08-29       Impact factor: 12.079

3.  Speckle-constrained variational methods for image restoration in optical coherence tomography.

Authors:  Daiqiang Yin; Ying Gu; Ping Xue
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2013-05-01       Impact factor: 2.129

4.  Wide-field retinal optical coherence tomography with wavefront sensorless adaptive optics for enhanced imaging of targeted regions.

Authors:  James Polans; Brenton Keller; Oscar M Carrasco-Zevallos; Francesco LaRocca; Elijah Cole; Heather E Whitson; Eleonora M Lad; Sina Farsiu; Joseph A Izatt
Journal:  Biomed Opt Express       Date:  2016-12-02       Impact factor: 3.732

5.  Analysis of scattering statistics and governing distribution functions in optical coherence tomography.

Authors:  Mitsuro Sugita; Andrew Weatherbee; Kostadinka Bizheva; Ivan Popov; Alex Vitkin
Journal:  Biomed Opt Express       Date:  2016-06-10       Impact factor: 3.732

Review 6.  Performance evaluation of automated segmentation software on optical coherence tomography volume data.

Authors:  Jing Tian; Boglarka Varga; Erika Tatrai; Palya Fanni; Gabor Mark Somfai; William E Smiddy; Delia Cabrera Debuc
Journal:  J Biophotonics       Date:  2016-03-11       Impact factor: 3.207

7.  Intraretinal layer segmentation of macular optical coherence tomography images using optimal 3-D graph search.

Authors:  Mona K Garvin; Michael D Abramoff; Randy Kardon; Stephen R Russell; Xiaodong Wu; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2008-10       Impact factor: 10.048

8.  Texture analysis of optical coherence tomography speckle for characterizing biological tissues in vivo.

Authors:  Andras A Lindenmaier; Leigh Conroy; Golnaz Farhat; Ralph S DaCosta; Costel Flueraru; I Alex Vitkin
Journal:  Opt Lett       Date:  2013-04-15       Impact factor: 3.776

9.  Retinal imaging by laser polarimetry and optical coherence tomography evidence of axonal degeneration in multiple sclerosis.

Authors:  Maulik S Zaveri; Amy Conger; Amber Salter; Teresa C Frohman; Steven L Galetta; Clyde E Markowitz; Dina A Jacobs; Gary R Cutter; Gui-Shuang Ying; Maureen G Maguire; Peter A Calabresi; Laura J Balcer; Elliot M Frohman
Journal:  Arch Neurol       Date:  2008-07

10.  Automated 3-D method for the correction of axial artifacts in spectral-domain optical coherence tomography images.

Authors:  Bhavna Antony; Michael D Abràmoff; Li Tang; Wishal D Ramdas; Johannes R Vingerling; Nomdo M Jansonius; Kyungmoo Lee; Young H Kwon; Milan Sonka; Mona K Garvin
Journal:  Biomed Opt Express       Date:  2011-07-27       Impact factor: 3.732

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  8 in total

1.  Aperture phase modulation with adaptive optics: a novel approach for speckle reduction and structure extraction in optical coherence tomography.

Authors:  Pengfei Zhang; Suman K Manna; Eric B Miller; Yifan Jian; Ratheesh K Meleppat; Marinko V Sarunic; Edward N Pugh; Robert J Zawadzki
Journal:  Biomed Opt Express       Date:  2019-01-15       Impact factor: 3.732

2.  Automated Deformation-Based Analysis of 3D Optical Coherence Tomography in Diabetic Retinopathy.

Authors:  Maziyar M Khansari; Jiong Zhang; Yuchuan Qiao; Jin Kyu Gahm; Mona Sharifi Sarabi; Amir H Kashani; Yonggang Shi
Journal:  IEEE Trans Med Imaging       Date:  2019-06-24       Impact factor: 10.048

3.  Endoscopic optical coherence tomography angiography using inverse SNR-amplitude decorrelation features and electrothermal micro-electro-mechanical system raster scan.

Authors:  Lin Yao; Huakun Li; Kaiyuan Liu; Ziyi Zhang; Peng Li
Journal:  Quant Imaging Med Surg       Date:  2022-06

Review 4.  Approaches to quantify optical coherence tomography angiography metrics.

Authors:  Bingyao Tan; Ralene Sim; Jacqueline Chua; Damon W K Wong; Xinwen Yao; Gerhard Garhöfer; Doreen Schmidl; René M Werkmeister; Leopold Schmetterer
Journal:  Ann Transl Med       Date:  2020-09

5.  Real-time corneal segmentation and 3D needle tracking in intrasurgical OCT.

Authors:  Brenton Keller; Mark Draelos; Gao Tang; Sina Farsiu; Anthony N Kuo; Kris Hauser; Joseph A Izatt
Journal:  Biomed Opt Express       Date:  2018-05-21       Impact factor: 3.732

6.  Deep longitudinal transfer learning-based automatic segmentation of photoreceptor ellipsoid zone defects on optical coherence tomography images of macular telangiectasia type 2.

Authors:  Jessica Loo; Leyuan Fang; David Cunefare; Glenn J Jaffe; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2018-05-16       Impact factor: 3.732

7.  Temporal speckle-averaging of optical coherence tomography volumes for in-vivo cellular resolution neuronal and vascular retinal imaging.

Authors:  Pengfei Zhang; Eric B Miller; Suman K Manna; Ratheesh K Meleppat; Edward N Pugh; Robert J Zawadzki
Journal:  Neurophotonics       Date:  2019-09-04       Impact factor: 3.593

8.  Signal averaging improves signal-to-noise in OCT images: But which approach works best, and when?

Authors:  Bernhard Baumann; Conrad W Merkle; Rainer A Leitgeb; Marco Augustin; Andreas Wartak; Michael Pircher; Christoph K Hitzenberger
Journal:  Biomed Opt Express       Date:  2019-10-17       Impact factor: 3.732

  8 in total

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