Literature DB >> 27499829

APPLYING SPARSE CODING TO SURFACE MULTIVARIATE TENSOR-BASED MORPHOMETRY TO PREDICT FUTURE COGNITIVE DECLINE.

Jie Zhang1, Cynthia Stonnington2, Qingyang Li1, Jie Shi1, Robert J Bauer3, Boris A Gutman4, Kewei Chen3, Eric M Reiman3, Paul M Thompson4, Jieping Ye5, Yalin Wang1.   

Abstract

Alzheimer's disease (AD) is a progressive brain disease. Accurate diagnosis of AD and its prodromal stage, mild cognitive impairment, is crucial for clinical trial design. There is also growing interests in identifying brain imaging biomarkers that help evaluate AD risk presymptomatically. Here, we applied a recently developed multivariate tensor-based morphometry (mTBM) method to extract features from hippocampal surfaces, derived from anatomical brain MRI. For such surface-based features, the feature dimension is usually much larger than the number of subjects. We used dictionary learning and sparse coding to effectively reduce the feature dimensions. With the new features, an Adaboost classifier was employed for binary group classification. In tests on publicly available data from the Alzheimers Disease Neuroimaging Initiative, the new framework outperformed several standard imaging measures in classifying different stages of AD. The new approach combines the efficiency of sparse coding with the sensitivity of surface mTBM, and boosts classification performance.

Entities:  

Keywords:  Alzheimer’s disease; dictionary learning and sparse coding; multivariate tensor-based morphometry

Year:  2016        PMID: 27499829      PMCID: PMC4974012          DOI: 10.1109/ISBI.2016.7493350

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  21 in total

1.  Morphometric analysis of lateral ventricles in schizophrenia and healthy controls regarding genetic and disease-specific factors.

Authors:  Martin Styner; Jeffrey A Lieberman; Robert K McClure; Daniel R Weinberger; Douglas W Jones; Guido Gerig
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-16       Impact factor: 11.205

2.  Log-Euclidean metrics for fast and simple calculus on diffusion tensors.

Authors:  Vincent Arsigny; Pierre Fillard; Xavier Pennec; Nicholas Ayache
Journal:  Magn Reson Med       Date:  2006-08       Impact factor: 4.668

3.  Tensor-based cortical surface morphometry via weighted spherical harmonic representation.

Authors:  Moo K Chung; Kim M Dalton; Richard J Davidson
Journal:  IEEE Trans Med Imaging       Date:  2008-08       Impact factor: 10.048

4.  Applying tensor-based morphometry to parametric surfaces can improve MRI-based disease diagnosis.

Authors:  Yalin Wang; Lei Yuan; Jie Shi; Alexander Greve; Jieping Ye; Arthur W Toga; Allan L Reiss; Paul M Thompson
Journal:  Neuroimage       Date:  2013-02-20       Impact factor: 6.556

5.  Surface-based TBM boosts power to detect disease effects on the brain: an N=804 ADNI study.

Authors:  Yalin Wang; Yang Song; Priya Rajagopalan; Tuo An; Krystal Liu; Yi-Yu Chou; Boris Gutman; Arthur W Toga; Paul M Thompson
Journal:  Neuroimage       Date:  2011-03-23       Impact factor: 6.556

6.  Surface fluid registration of conformal representation: application to detect disease burden and genetic influence on hippocampus.

Authors:  Jie Shi; Paul M Thompson; Boris Gutman; Yalin Wang
Journal:  Neuroimage       Date:  2013-04-13       Impact factor: 6.556

7.  Multivariate tensor-based morphometry on surfaces: application to mapping ventricular abnormalities in HIV/AIDS.

Authors:  Yalin Wang; Jie Zhang; Boris Gutman; Tony F Chan; James T Becker; Howard J Aizenstein; Oscar L Lopez; Robert J Tamburo; Arthur W Toga; Paul M Thompson
Journal:  Neuroimage       Date:  2009-11-06       Impact factor: 6.556

8.  Mapping hippocampal and ventricular change in Alzheimer disease.

Authors:  Paul M Thompson; Kiralee M Hayashi; Greig I De Zubicaray; Andrew L Janke; Stephen E Rose; James Semple; Michael S Hong; David H Herman; David Gravano; David M Doddrell; Arthur W Toga
Journal:  Neuroimage       Date:  2004-08       Impact factor: 6.556

9.  Disease classification with hippocampal shape invariants.

Authors:  Boris Gutman; Yalin Wang; Jonathan Morra; Arthur W Toga; Paul M Thompson
Journal:  Hippocampus       Date:  2009-06       Impact factor: 3.899

Review 10.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

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  12 in total

1.  MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES.

Authors:  Jie Zhang; Yanshuai Tu; Qingyang Li; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2018-05-24

2.  Hyperbolic Space Sparse Coding with Its Application on Prediction of Alzheimer's Disease in Mild Cognitive Impairment.

Authors:  Jie Zhang; Jie Shi; Cynthia Stonnington; Qingyang Li; Boris A Gutman; Kewei Chen; Eric M Reiman; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Med Image Comput Comput Assist Interv       Date:  2016-10-02

3.  Multi-Source Multi-Target Dictionary Learning for Prediction of Cognitive Decline.

Authors:  Jie Zhang; Qingyang Li; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Inf Process Med Imaging       Date:  2017-05-23

4.  EMPOWERING CORTICAL THICKNESS MEASURES IN CLINICAL DIAGNOSIS OF ALZHEIMER'S DISEASE WITH SPHERICAL SPARSE CODING.

Authors:  Jie Zhang; Yonghui Fan; Qingyang Li; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2017-06-19

5.  Multi-task Dictionary Learning based on Convolutional Neural Networks for Longitudinal Clinical Score Predictions in Alzheimer's Disease.

Authors:  Qunxi Dong; Jie Zhang; Qingyang Li; Pau M Thompson; Richard J Caselli; Jieping Ye; Yalin Wang
Journal:  Hum Brain Artif Intell (2019)       Date:  2019-11-10

6.  HIPPOCAMPUS MORPHOMETRY STUDY ON PATHOLOGY-CONFIRMED ALZHEIMER'S DISEASE PATIENTS WITH SURFACE MULTIVARIATE MORPHOMETRY STATISTICS.

Authors:  Jianfeng Wu; Jie Zhang; Jie Shi; Kewei Chen; Richard J Caselli; Eric M Reiman; Yalin Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2018-05-24

7.  Towards a Holistic Cortical Thickness Descriptor: Heat Kernel-Based Grey Matter Morphology Signatures.

Authors:  Gang Wang; Yalin Wang
Journal:  Neuroimage       Date:  2016-12-26       Impact factor: 6.556

8.  Integrating Convolutional Neural Networks and Multi-Task Dictionary Learning for Cognitive Decline Prediction with Longitudinal Images.

Authors:  Qunxi Dong; Jie Zhang; Qingyang Li; Junwen Wang; Natasha Leporé; Paul M Thompson; Richard J Caselli; Jieping Ye; Yalin Wang
Journal:  J Alzheimers Dis       Date:  2020       Impact factor: 4.472

9.  Predicting future cognitive decline with hyperbolic stochastic coding.

Authors:  Jie Zhang; Qunxi Dong; Jie Shi; Qingyang Li; Cynthia M Stonnington; Boris A Gutman; Kewei Chen; Eric M Reiman; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Med Image Anal       Date:  2021-02-24       Impact factor: 8.545

10.  Multi-Resemblance Multi-Target Low-Rank Coding for Prediction of Cognitive Decline With Longitudinal Brain Images.

Authors:  Jie Zhang; Jianfeng Wu; Qingyang Li; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  IEEE Trans Med Imaging       Date:  2021-07-30       Impact factor: 11.037

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