Literature DB >> 28066843

Hyperbolic Space Sparse Coding with Its Application on Prediction of Alzheimer's Disease in Mild Cognitive Impairment.

Jie Zhang1, Jie Shi1, Cynthia Stonnington2, Qingyang Li1, Boris A Gutman3, Kewei Chen4, Eric M Reiman4, Richard J Caselli5, Paul M Thompson3, Jieping Ye6, Yalin Wang1.   

Abstract

Mild Cognitive Impairment (MCI) is a transitional stage between normal age-related cognitive decline and Alzheimer's disease (AD). Here we introduce a hyperbolic space sparse coding method to predict impending decline of MCI patients to dementia using surface measures of ventricular enlargement. First, we compute diffeomorphic mappings between ventricular surfaces using a canonical hyperbolic parameter space with consistent boundary conditions and surface tensor-based morphometry is computed to measure local surface deformations. Second, ring-shaped patches of TBM features are selected according to the geometric structure of the hyperbolic parameter space to initialize a dictionary. Sparse coding is then applied on the patch features to learn sparse codes and update the dictionary. Finally, we adopt max-pooling to reduce the feature dimensions and apply Adaboost to predict AD in MCI patients (N = 133) from the Alzheimer's Disease Neuroimaging Initiative baseline dataset. Our work achieved an accuracy rate of 96.7% and outperformed some other morphometry measures. The hyperbolic space sparse coding method may offer a more sensitive tool to study AD and its early symptom.

Entities:  

Keywords:  Hyperbolic Parameter Space; Mild Cognitive Impairment; Ring-shaped Patches; Sparse Coding and Dictionary Learning

Mesh:

Year:  2016        PMID: 28066843      PMCID: PMC5217478          DOI: 10.1007/978-3-319-46720-7_38

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  9 in total

1.  Morphometric analysis of lateral ventricles in schizophrenia and healthy controls regarding genetic and disease-specific factors.

Authors:  Martin Styner; Jeffrey A Lieberman; Robert K McClure; Daniel R Weinberger; Douglas W Jones; Guido Gerig
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-16       Impact factor: 11.205

2.  A Bayesian model of shape and appearance for subcortical brain segmentation.

Authors:  Brian Patenaude; Stephen M Smith; David N Kennedy; Mark Jenkinson
Journal:  Neuroimage       Date:  2011-02-23       Impact factor: 6.556

3.  Cortical thickness analysis in autism with heat kernel smoothing.

Authors:  Moo K Chung; Steven M Robbins; Kim M Dalton; Richard J Davidson; Andrew L Alexander; Alan C Evans
Journal:  Neuroimage       Date:  2005-05-01       Impact factor: 6.556

4.  Brain atrophy associated with baseline and longitudinal measures of cognition.

Authors:  V A Cardenas; L L Chao; C Studholme; K Yaffe; B L Miller; C Madison; S T Buckley; D Mungas; N Schuff; M W Weiner
Journal:  Neurobiol Aging       Date:  2009-05-14       Impact factor: 4.673

5.  Predicting clinical scores from magnetic resonance scans in Alzheimer's disease.

Authors:  Cynthia M Stonnington; Carlton Chu; Stefan Klöppel; Clifford R Jack; John Ashburner; Richard S J Frackowiak
Journal:  Neuroimage       Date:  2010-03-25       Impact factor: 6.556

6.  APPLYING SPARSE CODING TO SURFACE MULTIVARIATE TENSOR-BASED MORPHOMETRY TO PREDICT FUTURE COGNITIVE DECLINE.

Authors:  Jie Zhang; Cynthia Stonnington; Qingyang Li; Jie Shi; Robert J Bauer; Boris A Gutman; Kewei Chen; Eric M Reiman; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2016-04

7.  Mapping hippocampal and ventricular change in Alzheimer disease.

Authors:  Paul M Thompson; Kiralee M Hayashi; Greig I De Zubicaray; Andrew L Janke; Stephen E Rose; James Semple; Michael S Hong; David H Herman; David Gravano; David M Doddrell; Arthur W Toga
Journal:  Neuroimage       Date:  2004-08       Impact factor: 6.556

8.  Ventricular shape biomarkers for Alzheimer's disease in clinical MR images.

Authors:  Luca Ferrarini; Walter M Palm; Hans Olofsen; Roald van der Landen; Mark A van Buchem; Johan H C Reiber; Faiza Admiraal-Behloul
Journal:  Magn Reson Med       Date:  2008-02       Impact factor: 4.668

9.  Studying ventricular abnormalities in mild cognitive impairment with hyperbolic Ricci flow and tensor-based morphometry.

Authors:  Jie Shi; Cynthia M Stonnington; Paul M Thompson; Kewei Chen; Boris Gutman; Cole Reschke; Leslie C Baxter; Eric M Reiman; Richard J Caselli; Yalin Wang
Journal:  Neuroimage       Date:  2014-10-05       Impact factor: 6.556

  9 in total
  10 in total

1.  Conformal invariants for multiply connected surfaces: Application to landmark curve-based brain morphometry analysis.

Authors:  Jie Shi; Wen Zhang; Miao Tang; Richard J Caselli; Yalin Wang
Journal:  Med Image Anal       Date:  2016-09-06       Impact factor: 8.545

2.  MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES.

Authors:  Jie Zhang; Yanshuai Tu; Qingyang Li; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2018-05-24

3.  Multi-Source Multi-Target Dictionary Learning for Prediction of Cognitive Decline.

Authors:  Jie Zhang; Qingyang Li; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Inf Process Med Imaging       Date:  2017-05-23

4.  EMPOWERING CORTICAL THICKNESS MEASURES IN CLINICAL DIAGNOSIS OF ALZHEIMER'S DISEASE WITH SPHERICAL SPARSE CODING.

Authors:  Jie Zhang; Yonghui Fan; Qingyang Li; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2017-06-19

5.  Multi-task Dictionary Learning based on Convolutional Neural Networks for Longitudinal Clinical Score Predictions in Alzheimer's Disease.

Authors:  Qunxi Dong; Jie Zhang; Qingyang Li; Pau M Thompson; Richard J Caselli; Jieping Ye; Yalin Wang
Journal:  Hum Brain Artif Intell (2019)       Date:  2019-11-10

6.  Isometry Invariant Shape Descriptors for Abnormality Detection on Brain Surfaces Affected by Alzheimer's Disease.

Authors:  Yanshuai Tu; Chengfeng Wen; Wen Zhang; Jianfeng Wu; Jie Zhang; Kewei Chen; Richard J Caselli; Eric M Reiman; Eric M Reiman; Yalin Wang
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2018-07

7.  Integrating Convolutional Neural Networks and Multi-Task Dictionary Learning for Cognitive Decline Prediction with Longitudinal Images.

Authors:  Qunxi Dong; Jie Zhang; Qingyang Li; Junwen Wang; Natasha Leporé; Paul M Thompson; Richard J Caselli; Jieping Ye; Yalin Wang
Journal:  J Alzheimers Dis       Date:  2020       Impact factor: 4.472

8.  Predicting future cognitive decline with hyperbolic stochastic coding.

Authors:  Jie Zhang; Qunxi Dong; Jie Shi; Qingyang Li; Cynthia M Stonnington; Boris A Gutman; Kewei Chen; Eric M Reiman; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Med Image Anal       Date:  2021-02-24       Impact factor: 8.545

9.  Multi-Resemblance Multi-Target Low-Rank Coding for Prediction of Cognitive Decline With Longitudinal Brain Images.

Authors:  Jie Zhang; Jianfeng Wu; Qingyang Li; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  IEEE Trans Med Imaging       Date:  2021-07-30       Impact factor: 11.037

10.  Predicting Brain Amyloid Using Multivariate Morphometry Statistics, Sparse Coding, and Correntropy: Validation in 1,101 Individuals From the ADNI and OASIS Databases.

Authors:  Jianfeng Wu; Qunxi Dong; Jie Gui; Jie Zhang; Yi Su; Kewei Chen; Paul M Thompson; Richard J Caselli; Eric M Reiman; Jieping Ye; Yalin Wang
Journal:  Front Neurosci       Date:  2021-08-06       Impact factor: 4.677

  10 in total

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