Literature DB >> 28959379

EMPOWERING CORTICAL THICKNESS MEASURES IN CLINICAL DIAGNOSIS OF ALZHEIMER'S DISEASE WITH SPHERICAL SPARSE CODING.

Jie Zhang1, Yonghui Fan1, Qingyang Li1, Paul M Thompson2, Jieping Ye3, Yalin Wang1.   

Abstract

Cortical thickness estimation performed in vivo via magnetic resonance imaging (MRI) is an important technique for the diagnosis and understanding of the progression of Alzheimer's disease (AD). Directly using raw cortical thickness measures as features with Support Vector Machine (SVM) for clinical group classification only yields modest results since brain areas are not equally atrophied during AD progression. Therefore, feature reduction is generally required to retain only the most relevant features for the final classification. In this paper, a spherical sparse coding and dictionary learning method is proposed and it achieves relatively high classification results on publicly available data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) 2 dataset (N = 201) which contains structural MRI data of four clinical groups: cognitive unimpaired (CU), early mild cognitive impairment (EMCI), later MCI (LMCI) and AD. The proposed framework takes the estimated cortical thickness and the spherical parameterization computed by FreeSurfer as inputs and constructs weighted patches in the spherical parameter domain of the cortical surface. Then sparse coding is applied to the resulting surface patch features, followed by max-pooling to extract the final feature sets. Finally, SVM is employed for binary group classifications. The results show the superiority of the proposed method over other cortical morphometry systems and offer a different way to study the early identification and prevention of AD.

Entities:  

Keywords:  Alzheimer’s Disease; Cortical Thickness; Sparse Coding; Support Vector Machine (SVM); Weighted Spherical Harmonics

Year:  2017        PMID: 28959379      PMCID: PMC5613953          DOI: 10.1109/ISBI.2017.7950557

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  13 in total

1.  Three-dimensional mapping of cortical thickness using Laplace's equation.

Authors:  S E Jones; B R Buchbinder; I Aharon
Journal:  Hum Brain Mapp       Date:  2000-09       Impact factor: 5.038

2.  Discriminant analysis of longitudinal cortical thickness changes in Alzheimer's disease using dynamic and network features.

Authors:  Yang Li; Yaping Wang; Guorong Wu; Feng Shi; Luping Zhou; Weili Lin; Dinggang Shen
Journal:  Neurobiol Aging       Date:  2011-01-26       Impact factor: 4.673

3.  Individual subject classification for Alzheimer's disease based on incremental learning using a spatial frequency representation of cortical thickness data.

Authors:  Youngsang Cho; Joon-Kyung Seong; Yong Jeong; Sung Yong Shin
Journal:  Neuroimage       Date:  2011-10-08       Impact factor: 6.556

4.  A comparison of voxel and surface based cortical thickness estimation methods.

Authors:  Matthew J Clarkson; M Jorge Cardoso; Gerard R Ridgway; Marc Modat; Kelvin K Leung; Jonathan D Rohrer; Nick C Fox; Sébastien Ourselin
Journal:  Neuroimage       Date:  2011-05-26       Impact factor: 6.556

Review 5.  The clinical use of structural MRI in Alzheimer disease.

Authors:  Giovanni B Frisoni; Nick C Fox; Clifford R Jack; Philip Scheltens; Paul M Thompson
Journal:  Nat Rev Neurol       Date:  2010-02       Impact factor: 42.937

Review 6.  FreeSurfer.

Authors:  Bruce Fischl
Journal:  Neuroimage       Date:  2012-01-10       Impact factor: 6.556

7.  Automatic classification of patients with Alzheimer's disease from structural MRI: a comparison of ten methods using the ADNI database.

Authors:  Rémi Cuingnet; Emilie Gerardin; Jérôme Tessieras; Guillaume Auzias; Stéphane Lehéricy; Marie-Odile Habert; Marie Chupin; Habib Benali; Olivier Colliot
Journal:  Neuroimage       Date:  2010-06-11       Impact factor: 6.556

8.  Automated cortical thickness measurements from MRI can accurately separate Alzheimer's patients from normal elderly controls.

Authors:  Jason P Lerch; Jens Pruessner; Alex P Zijdenbos; D Louis Collins; Stefan J Teipel; Harald Hampel; Alan C Evans
Journal:  Neurobiol Aging       Date:  2006-11-13       Impact factor: 4.673

9.  APPLYING SPARSE CODING TO SURFACE MULTIVARIATE TENSOR-BASED MORPHOMETRY TO PREDICT FUTURE COGNITIVE DECLINE.

Authors:  Jie Zhang; Cynthia Stonnington; Qingyang Li; Jie Shi; Robert J Bauer; Boris A Gutman; Kewei Chen; Eric M Reiman; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2016-04

10.  Standardization of analysis sets for reporting results from ADNI MRI data.

Authors:  Bradley T Wyman; Danielle J Harvey; Karen Crawford; Matt A Bernstein; Owen Carmichael; Patricia E Cole; Paul K Crane; Charles DeCarli; Nick C Fox; Jeffrey L Gunter; Derek Hill; Ronald J Killiany; Chahin Pachai; Adam J Schwarz; Norbert Schuff; Matthew L Senjem; Joyce Suhy; Paul M Thompson; Michael Weiner; Clifford R Jack
Journal:  Alzheimers Dement       Date:  2012-10-27       Impact factor: 21.566

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  6 in total

1.  MULTI-TASK SPARSE SCREENING FOR PREDICTING FUTURE CLINICAL SCORES USING LONGITUDINAL CORTICAL THICKNESS MEASURES.

Authors:  Jie Zhang; Yanshuai Tu; Qingyang Li; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2018-05-24

2.  Construction of 4D infant cortical surface atlases with sharp folding patterns via spherical patch-based group-wise sparse representation.

Authors:  Zhengwang Wu; Li Wang; Weili Lin; John H Gilmore; Gang Li; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2019-05-21       Impact factor: 5.038

3.  Isometry Invariant Shape Descriptors for Abnormality Detection on Brain Surfaces Affected by Alzheimer's Disease.

Authors:  Yanshuai Tu; Chengfeng Wen; Wen Zhang; Jianfeng Wu; Jie Zhang; Kewei Chen; Richard J Caselli; Eric M Reiman; Eric M Reiman; Yalin Wang
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2018-07

4.  Integrating Convolutional Neural Networks and Multi-Task Dictionary Learning for Cognitive Decline Prediction with Longitudinal Images.

Authors:  Qunxi Dong; Jie Zhang; Qingyang Li; Junwen Wang; Natasha Leporé; Paul M Thompson; Richard J Caselli; Jieping Ye; Yalin Wang
Journal:  J Alzheimers Dis       Date:  2020       Impact factor: 4.472

5.  Predicting future cognitive decline with hyperbolic stochastic coding.

Authors:  Jie Zhang; Qunxi Dong; Jie Shi; Qingyang Li; Cynthia M Stonnington; Boris A Gutman; Kewei Chen; Eric M Reiman; Richard J Caselli; Paul M Thompson; Jieping Ye; Yalin Wang
Journal:  Med Image Anal       Date:  2021-02-24       Impact factor: 8.545

6.  Predicting Brain Amyloid Using Multivariate Morphometry Statistics, Sparse Coding, and Correntropy: Validation in 1,101 Individuals From the ADNI and OASIS Databases.

Authors:  Jianfeng Wu; Qunxi Dong; Jie Gui; Jie Zhang; Yi Su; Kewei Chen; Paul M Thompson; Richard J Caselli; Eric M Reiman; Jieping Ye; Yalin Wang
Journal:  Front Neurosci       Date:  2021-08-06       Impact factor: 4.677

  6 in total

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