Literature DB >> 25649694

Expanding the enzyme universe: accessing non-natural reactions by mechanism-guided directed evolution.

Hans Renata1, Z Jane Wang, Frances H Arnold.   

Abstract

High selectivity and exquisite control over the outcome of reactions entice chemists to use biocatalysts in organic synthesis. However, many useful reactions are not accessible because they are not in nature's known repertoire. In this Review, we outline an evolutionary approach to engineering enzymes to catalyze reactions not found in nature. We begin with examples of how nature has discovered new catalytic functions and how such evolutionary progression has been recapitulated in the laboratory starting from extant enzymes. We then examine non-native enzyme activities that have been exploited for chemical synthesis, with an emphasis on reactions that do not have natural counterparts. Non-natural activities can be improved by directed evolution, thus mimicking the process used by nature to create new catalysts. Finally, we describe the discovery of non-native catalytic functions that may provide future opportunities for the expansion of the enzyme universe.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  biocatalysis; enzymes; non-natural activity; promiscuity; protein engineering

Mesh:

Substances:

Year:  2015        PMID: 25649694      PMCID: PMC4404643          DOI: 10.1002/anie.201409470

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  105 in total

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Review 2.  Expanding P450 catalytic reaction space through evolution and engineering.

Authors:  John A McIntosh; Christopher C Farwell; Frances H Arnold
Journal:  Curr Opin Chem Biol       Date:  2014-03-20       Impact factor: 8.822

3.  Sulfuration of O-acetylhomoserine and O-acetylserine by two enzyme fractions from spinach.

Authors:  J Giovanelli; S H Mudd
Journal:  Biochem Biophys Res Commun       Date:  1968-04-19       Impact factor: 3.575

4.  Atrazine chlorohydrolase from Pseudomonas sp. strain ADP: gene sequence, enzyme purification, and protein characterization.

Authors:  M L de Souza; M J Sadowsky; L P Wackett
Journal:  J Bacteriol       Date:  1996-08       Impact factor: 3.490

Review 5.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

6.  Mechanism of Agrobacterium beta-glucosidase: kinetic studies.

Authors:  J B Kempton; S G Withers
Journal:  Biochemistry       Date:  1992-10-20       Impact factor: 3.162

7.  Substrate positioning controls the partition between halogenation and hydroxylation in the aliphatic halogenase, SyrB2.

Authors:  Megan L Matthews; Christopher S Neumann; Linde A Miles; Tyler L Grove; Squire J Booker; Carsten Krebs; Christopher T Walsh; J Martin Bollinger
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-06       Impact factor: 11.205

8.  Cytochrome P450-Catalyzed Insertion of Carbenoids into N-H Bonds.

Authors:  Z Jane Wang; Nicole E Peck; Hans Renata; Frances H Arnold
Journal:  Chem Sci       Date:  2014-02-01       Impact factor: 9.825

9.  Enantioselective imidation of sulfides via enzyme-catalyzed intermolecular nitrogen-atom transfer.

Authors:  Christopher C Farwell; John A McIntosh; Todd K Hyster; Z Jane Wang; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2014-06-05       Impact factor: 15.419

10.  Stringency of the 2-His-1-Asp active-site motif in prolyl 4-hydroxylase.

Authors:  Kelly L Gorres; Khian Hong Pua; Ronald T Raines
Journal:  PLoS One       Date:  2009-11-05       Impact factor: 3.240

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  94 in total

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Authors:  Antonio Tinoco; Yang Wei; John-Paul Bacik; Daniela M Carminati; Eric J Moore; Nozomi Ando; Yong Zhang; Rudi Fasan
Journal:  ACS Catal       Date:  2018-12-28       Impact factor: 13.084

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Authors:  Samuel D Stimple; Matthew D Smith; Peter M Tessier
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Authors:  Amy E Fraley; David H Sherman
Journal:  Bioorg Med Chem Lett       Date:  2018-04-30       Impact factor: 2.823

Review 4.  Exploiting and engineering hemoproteins for abiological carbene and nitrene transfer reactions.

Authors:  Oliver F Brandenberg; Rudi Fasan; Frances H Arnold
Journal:  Curr Opin Biotechnol       Date:  2017-07-13       Impact factor: 9.740

5.  Enzymatic construction of highly strained carbocycles.

Authors:  Kai Chen; Xiongyi Huang; S B Jennifer Kan; Ruijie K Zhang; Frances H Arnold
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6.  Genetically programmed chiral organoborane synthesis.

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Journal:  Nature       Date:  2017-11-29       Impact factor: 49.962

7.  Pursuing DNA catalysts for protein modification.

Authors:  Scott K Silverman
Journal:  Acc Chem Res       Date:  2015-05-05       Impact factor: 22.384

8.  Ultrahigh-throughput-directed enzyme evolution by absorbance-activated droplet sorting (AADS).

Authors:  Fabrice Gielen; Raphaelle Hours; Stephane Emond; Martin Fischlechner; Ursula Schell; Florian Hollfelder
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

9.  α2-6-Neosialidase: A Sialyltransferase Mutant as a Sialyl Linkage-Specific Sialidase.

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Journal:  ACS Chem Biol       Date:  2018-03-28       Impact factor: 5.100

10.  Developing a cell-bound detection system for the screening of oxidase activity using the fluorescent peroxide sensor roGFP2-Orp1.

Authors:  P L Herzog; E Borghi; M W Traxlmayr; C Obinger; H D Sikes; C K Peterbauer
Journal:  Protein Eng Des Sel       Date:  2020-09-14       Impact factor: 1.650

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