Literature DB >> 27399966

Genome-wide association meta-analysis in Chinese and European individuals identifies ten new loci associated with systemic lupus erythematosus.

David L Morris1, Yujun Sheng2,3,4, Yan Zhang5, Timothy J Vyse1,6, Yong-Fei Wang5, Zhengwei Zhu2,3, Philip Tombleson1, Lingyan Chen1, Deborah S Cunninghame Graham1, James Bentham7, Amy L Roberts1, Ruoyan Chen5, Xianbo Zuo2,3, Tingyou Wang5, Leilei Wen2,3, Chao Yang2,3, Lu Liu2,3, Lulu Yang2,3, Feng Li2,3, Yuanbo Huang2,3, Xianyong Yin2,3, Sen Yang2,3, Lars Rönnblom8, Barbara G Fürnrohr9,10,11,12, Reinhard E Voll9,10,13,14,15, Georg Schett9,10, Nathalie Costedoat-Chalumeau16,17, Patrick M Gaffney18, Yu Lung Lau5,19, Xuejun Zhang2,3,20, Wanling Yang5, Yong Cui2,3,4.   

Abstract

Systemic lupus erythematosus (SLE; OMIM 152700) is a genetically complex autoimmune disease. Genome-wide association studies (GWASs) have identified more than 50 loci as robustly associated with the disease in single ancestries, but genome-wide transancestral studies have not been conducted. We combined three GWAS data sets from Chinese (1,659 cases and 3,398 controls) and European (4,036 cases and 6,959 controls) populations. A meta-analysis of these studies showed that over half of the published SLE genetic associations are present in both populations. A replication study in Chinese (3,043 cases and 5,074 controls) and European (2,643 cases and 9,032 controls) subjects found ten previously unreported SLE loci. Our study provides further evidence that the majority of genetic risk polymorphisms for SLE are contained within the same regions across both populations. Furthermore, a comparison of risk allele frequencies and genetic risk scores suggested that the increased prevalence of SLE in non-Europeans (including Asians) has a genetic basis.

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Year:  2016        PMID: 27399966      PMCID: PMC4966635          DOI: 10.1038/ng.3603

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  43 in total

1.  Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.

Authors:  Wanling Yang; Huayang Tang; Yan Zhang; Xianfa Tang; Jing Zhang; Liangdan Sun; Jing Yang; Yong Cui; Lu Zhang; Nattiya Hirankarn; Hui Cheng; Hai-Feng Pan; Jinping Gao; Tsz Leung Lee; Yujun Sheng; Chak Sing Lau; Yang Li; Tak Mao Chan; Xianyong Yin; Dingge Ying; Qianjin Lu; Alexander Moon Ho Leung; Xianbo Zuo; Xiang Chen; Kwok Lung Tong; Fusheng Zhou; Qingchun Diao; Niko Kei Chiu Tse; Hongfu Xie; Chi Chiu Mok; Fei Hao; Sik Nin Wong; Bingjun Shi; Ka Wing Lee; Yan Hui; Marco Hok Kung Ho; Bo Liang; Pamela Pui Wah Lee; Hongzhou Cui; Qing Guo; Brian Hon-Yin Chung; Xiongming Pu; Qiji Liu; Xiaoguang Zhang; Change Zhang; Chun Yin Chong; Hong Fang; Raymond Woon Sing Wong; Yonghu Sun; Mo Yin Mok; Xiang-Pei Li; Yingyos Avihingsanon; Zhifang Zhai; Pornpimol Rianthavorn; Thavatchai Deekajorndej; Kanya Suphapeetiporn; Fei Gao; Vorasuk Shotelersuk; Xiaojing Kang; Shirley King Yee Ying; Lijuan Zhang; Wilfred Hing Sang Wong; Dingxian Zhu; Samuel Ka Shun Fung; Fanqin Zeng; Wai Ming Lai; Chun-Ming Wong; Irene Oi Lin Ng; Maria-Mercè Garcia-Barceló; Stacey S Cherny; Nan Shen; Paul Kwong-Hang Tam; Pak Chung Sham; Dong-Qing Ye; Sen Yang; Xuejun Zhang; Yu Lung Lau
Journal:  Am J Hum Genet       Date:  2012-12-27       Impact factor: 11.025

2.  Association analyses identifying two common susceptibility loci shared by psoriasis and systemic lupus erythematosus in the Chinese Han population.

Authors:  Yang Li; Hui Cheng; Xian-bo Zuo; Yu-jun Sheng; Fu-sheng Zhou; Xian-fa Tang; Hua-yang Tang; Jin-ping Gao; Zheng Zhang; Su-ming He; Yong-mei Lv; Kun-ju Zhu; Da-yan Hu; Bo Liang; Jun Zhu; Xiao-dong Zheng; Liang-dan Sun; Sen Yang; Yong Cui; Jian-jun Liu; Xue-jun Zhang
Journal:  J Med Genet       Date:  2013-09-26       Impact factor: 6.318

Review 3.  Epidemiology of systemic lupus erythematosus: a comparison of worldwide disease burden.

Authors:  N Danchenko; J A Satia; M S Anthony
Journal:  Lupus       Date:  2006       Impact factor: 2.911

4.  The NIH Roadmap Epigenomics Mapping Consortium.

Authors:  Bradley E Bernstein; John A Stamatoyannopoulos; Joseph F Costello; Bing Ren; Aleksandar Milosavljevic; Alexander Meissner; Manolis Kellis; Marco A Marra; Arthur L Beaudet; Joseph R Ecker; Peggy J Farnham; Martin Hirst; Eric S Lander; Tarjei S Mikkelsen; James A Thomson
Journal:  Nat Biotechnol       Date:  2010-10       Impact factor: 54.908

5.  Genome-wide association analysis of autoantibody positivity in type 1 diabetes cases.

Authors:  Vincent Plagnol; Joanna M M Howson; Deborah J Smyth; Neil Walker; Jason P Hafler; Chris Wallace; Helen Stevens; Laura Jackson; Matthew J Simmonds; Polly J Bingley; Stephen C Gough; John A Todd
Journal:  PLoS Genet       Date:  2011-08-04       Impact factor: 5.917

6.  Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX.

Authors:  Geoffrey Hom; Robert R Graham; Barmak Modrek; Kimberly E Taylor; Ward Ortmann; Sophie Garnier; Annette T Lee; Sharon A Chung; Ricardo C Ferreira; P V Krishna Pant; Dennis G Ballinger; Roman Kosoy; F Yesim Demirci; M Ilyas Kamboh; Amy H Kao; Chao Tian; Iva Gunnarsson; Anders A Bengtsson; Solbritt Rantapää-Dahlqvist; Michelle Petri; Susan Manzi; Michael F Seldin; Lars Rönnblom; Ann-Christine Syvänen; Lindsey A Criswell; Peter K Gregersen; Timothy W Behrens
Journal:  N Engl J Med       Date:  2008-01-20       Impact factor: 91.245

7.  A family survey of lupus erythematosus. 1. Heritability.

Authors:  J S Lawrence; C L Martins; G L Drake
Journal:  J Rheumatol       Date:  1987-10       Impact factor: 4.666

8.  Characterization of human disease phenotypes associated with mutations in TREX1, RNASEH2A, RNASEH2B, RNASEH2C, SAMHD1, ADAR, and IFIH1.

Authors:  Yanick J Crow; Diana S Chase; Johanna Lowenstein Schmidt; Marcin Szynkiewicz; Gabriella M A Forte; Hannah L Gornall; Anthony Oojageer; Beverley Anderson; Amy Pizzino; Guy Helman; Mohamed S Abdel-Hamid; Ghada M Abdel-Salam; Sam Ackroyd; Alec Aeby; Guillermo Agosta; Catherine Albin; Stavit Allon-Shalev; Montse Arellano; Giada Ariaudo; Vijay Aswani; Riyana Babul-Hirji; Eileen M Baildam; Nadia Bahi-Buisson; Kathryn M Bailey; Christine Barnerias; Magalie Barth; Roberta Battini; Michael W Beresford; Geneviève Bernard; Marika Bianchi; Thierry Billette de Villemeur; Edward M Blair; Miriam Bloom; Alberto B Burlina; Maria Luisa Carpanelli; Daniel R Carvalho; Manuel Castro-Gago; Anna Cavallini; Cristina Cereda; Kate E Chandler; David A Chitayat; Abigail E Collins; Concepcion Sierra Corcoles; Nuno J V Cordeiro; Giovanni Crichiutti; Lyvia Dabydeen; Russell C Dale; Stefano D'Arrigo; Christian G E L De Goede; Corinne De Laet; Liesbeth M H De Waele; Ines Denzler; Isabelle Desguerre; Koenraad Devriendt; Maja Di Rocco; Michael C Fahey; Elisa Fazzi; Colin D Ferrie; António Figueiredo; Blanca Gener; Cyril Goizet; Nirmala R Gowrinathan; Kalpana Gowrishankar; Donncha Hanrahan; Bertrand Isidor; Bülent Kara; Nasaim Khan; Mary D King; Edwin P Kirk; Ram Kumar; Lieven Lagae; Pierre Landrieu; Heinz Lauffer; Vincent Laugel; Roberta La Piana; Ming J Lim; Jean-Pierre S-M Lin; Tarja Linnankivi; Mark T Mackay; Daphna R Marom; Charles Marques Lourenço; Shane A McKee; Isabella Moroni; Jenny E V Morton; Marie-Laure Moutard; Kevin Murray; Rima Nabbout; Sheela Nampoothiri; Noemi Nunez-Enamorado; Patrick J Oades; Ivana Olivieri; John R Ostergaard; Belén Pérez-Dueñas; Julie S Prendiville; Venkateswaran Ramesh; Magnhild Rasmussen; Luc Régal; Federica Ricci; Marlène Rio; Diana Rodriguez; Agathe Roubertie; Elisabetta Salvatici; Karin A Segers; Gyanranjan P Sinha; Doriette Soler; Ronen Spiegel; Tommy I Stödberg; Rachel Straussberg; Kathryn J Swoboda; Mohnish Suri; Uta Tacke; Tiong Y Tan; Johann te Water Naude; Keng Wee Teik; Maya Mary Thomas; Marianne Till; Davide Tonduti; Enza Maria Valente; Rudy Noel Van Coster; Marjo S van der Knaap; Grace Vassallo; Raymon Vijzelaar; Julie Vogt; Geoffrey B Wallace; Evangeline Wassmer; Hannah J Webb; William P Whitehouse; Robyn N Whitney; Maha S Zaki; Sameer M Zuberi; John H Livingston; Flore Rozenberg; Pierre Lebon; Adeline Vanderver; Simona Orcesi; Gillian I Rice
Journal:  Am J Med Genet A       Date:  2015-01-16       Impact factor: 2.802

9.  Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.

Authors:  Jeremy Goecks; Anton Nekrutenko; James Taylor
Journal:  Genome Biol       Date:  2010-08-25       Impact factor: 13.583

10.  Transancestral mapping of the MHC region in systemic lupus erythematosus identifies new independent and interacting loci at MSH5, HLA-DPB1 and HLA-G.

Authors:  Michelle M A Fernando; Jan Freudenberg; Annette Lee; David Lester Morris; Lora Boteva; Benjamin Rhodes; María Francisca Gonzalez-Escribano; Miguel Angel Lopez-Nevot; Sandra V Navarra; Peter K Gregersen; Javier Martin; Timothy J Vyse
Journal:  Ann Rheum Dis       Date:  2012-01-10       Impact factor: 19.103

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  101 in total

1.  Systemic lupus erythematosus: BAFF emerges from the genetic shadows.

Authors:  William Stohl
Journal:  Nat Rev Rheumatol       Date:  2017-06-15       Impact factor: 20.543

Review 2.  Epigenetic Variability in Systemic Lupus Erythematosus: What We Learned from Genome-Wide DNA Methylation Studies.

Authors:  Maria Teruel; Amr H Sawalha
Journal:  Curr Rheumatol Rep       Date:  2017-06       Impact factor: 4.592

Review 3.  The Post-GWAS Era: How to Validate the Contribution of Gene Variants in Lupus.

Authors:  Adam J Fike; Irina Elcheva; Ziaur S M Rahman
Journal:  Curr Rheumatol Rep       Date:  2019-01-23       Impact factor: 4.592

4.  Decreased Immunoglobulin G Core Fucosylation, A Player in Antibody-dependent Cell-mediated Cytotoxicity, is Associated with Autoimmune Thyroid Diseases.

Authors:  Tiphaine C Martin; Mirna Šimurina; Marta Ząbczyńska; Marina Martinic Kavur; Magdalena Rydlewska; Marija Pezer; Kamila Kozłowska; Andrea Burri; Marija Vilaj; Renata Turek-Jabrocka; Milena Krnjajić-Tadijanović; Małgorzata Trofimiuk-Müldner; Ivo Ugrina; Anna Lityńska; Alicja Hubalewska-Dydejczyk; Irena Trbojevic-Akmacic; Ee Mun Lim; John P Walsh; Ewa Pocheć; Tim D Spector; Scott G Wilson; Gordan Lauc
Journal:  Mol Cell Proteomics       Date:  2020-02-05       Impact factor: 5.911

5.  Systemic lupus erythematosus: New GWAS loci and insights into ancestry.

Authors:  Lydia Shipman
Journal:  Nat Rev Rheumatol       Date:  2016-07-28       Impact factor: 20.543

6.  The Role of the Transcription Factor Ets1 in Lupus and Other Autoimmune Diseases.

Authors:  Lee Ann Garrett-Sinha; Alyssa Kearly; Anne B Satterthwaite
Journal:  Crit Rev Immunol       Date:  2016       Impact factor: 2.214

7.  Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia.

Authors:  Zhiqiang Li; Jianhua Chen; Hao Yu; Lin He; Yifeng Xu; Dai Zhang; Qizhong Yi; Changgui Li; Xingwang Li; Jiawei Shen; Zhijian Song; Weidong Ji; Meng Wang; Juan Zhou; Boyu Chen; Yahui Liu; Jiqiang Wang; Peng Wang; Ping Yang; Qingzhong Wang; Guoyin Feng; Benxiu Liu; Wensheng Sun; Baojie Li; Guang He; Weidong Li; Chunling Wan; Qi Xu; Wenjin Li; Zujia Wen; Ke Liu; Fang Huang; Jue Ji; Stephan Ripke; Weihua Yue; Patrick F Sullivan; Michael C O'Donovan; Yongyong Shi
Journal:  Nat Genet       Date:  2017-10-09       Impact factor: 38.330

8.  [Trans-ethnic analysis of susceptibility variants in IgA nephropathy].

Authors:  Y Q Kang; Y M Zhang; P Hou; S F Shi; L J Liu; X J Zhou; J C Lv; H Zhang
Journal:  Beijing Da Xue Xue Bao Yi Xue Ban       Date:  2019-06-18

Review 9.  The genetics revolution in rheumatology: large scale genomic arrays and genetic mapping.

Authors:  Stephen Eyre; Gisela Orozco; Jane Worthington
Journal:  Nat Rev Rheumatol       Date:  2017-06-01       Impact factor: 20.543

10.  Bioinformatics analysis of epigenetic and SNP-related molecular markers in systemic lupus erythematosus.

Authors:  Shuoshan Xie; Qinghua Zeng; Shaxi Ouyang; Yumei Liang; Changjuan Xiao
Journal:  Am J Transl Res       Date:  2021-06-15       Impact factor: 4.060

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