Literature DB >> 23273568

Meta-analysis followed by replication identifies loci in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with systemic lupus erythematosus in Asians.

Wanling Yang1, Huayang Tang, Yan Zhang, Xianfa Tang, Jing Zhang, Liangdan Sun, Jing Yang, Yong Cui, Lu Zhang, Nattiya Hirankarn, Hui Cheng, Hai-Feng Pan, Jinping Gao, Tsz Leung Lee, Yujun Sheng, Chak Sing Lau, Yang Li, Tak Mao Chan, Xianyong Yin, Dingge Ying, Qianjin Lu, Alexander Moon Ho Leung, Xianbo Zuo, Xiang Chen, Kwok Lung Tong, Fusheng Zhou, Qingchun Diao, Niko Kei Chiu Tse, Hongfu Xie, Chi Chiu Mok, Fei Hao, Sik Nin Wong, Bingjun Shi, Ka Wing Lee, Yan Hui, Marco Hok Kung Ho, Bo Liang, Pamela Pui Wah Lee, Hongzhou Cui, Qing Guo, Brian Hon-Yin Chung, Xiongming Pu, Qiji Liu, Xiaoguang Zhang, Change Zhang, Chun Yin Chong, Hong Fang, Raymond Woon Sing Wong, Yonghu Sun, Mo Yin Mok, Xiang-Pei Li, Yingyos Avihingsanon, Zhifang Zhai, Pornpimol Rianthavorn, Thavatchai Deekajorndej, Kanya Suphapeetiporn, Fei Gao, Vorasuk Shotelersuk, Xiaojing Kang, Shirley King Yee Ying, Lijuan Zhang, Wilfred Hing Sang Wong, Dingxian Zhu, Samuel Ka Shun Fung, Fanqin Zeng, Wai Ming Lai, Chun-Ming Wong, Irene Oi Lin Ng, Maria-Mercè Garcia-Barceló, Stacey S Cherny, Nan Shen, Paul Kwong-Hang Tam, Pak Chung Sham, Dong-Qing Ye, Sen Yang, Xuejun Zhang, Yu Lung Lau.   

Abstract

Systemic lupus erythematosus (SLE) is a prototype autoimmune disease with a strong genetic involvement and ethnic differences. Susceptibility genes identified so far only explain a small portion of the genetic heritability of SLE, suggesting that many more loci are yet to be uncovered for this disease. In this study, we performed a meta-analysis of genome-wide association studies on SLE in Chinese Han populations and followed up the findings by replication in four additional Asian cohorts with a total of 5,365 cases and 10,054 corresponding controls. We identified genetic variants in or near CDKN1B, TET3, CD80, DRAM1, and ARID5B as associated with the disease. These findings point to potential roles of cell-cycle regulation, autophagy, and DNA demethylation in SLE pathogenesis. For the region involving TET3 and that involving CDKN1B, multiple independent SNPs were identified, highlighting a phenomenon that might partially explain the missing heritability of complex diseases.
Copyright © 2013 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23273568      PMCID: PMC3542470          DOI: 10.1016/j.ajhg.2012.11.018

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  55 in total

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2.  TET proteins in malignant hematopoiesis.

Authors:  Saskia M C Langemeijer; Mariam G Aslanyan; Joop H Jansen
Journal:  Cell Cycle       Date:  2009-12-05       Impact factor: 4.534

3.  A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.

Authors:  Vesela Gateva; Johanna K Sandling; Geoff Hom; Kimberly E Taylor; Sharon A Chung; Xin Sun; Ward Ortmann; Roman Kosoy; Ricardo C Ferreira; Gunnel Nordmark; Iva Gunnarsson; Elisabet Svenungsson; Leonid Padyukov; Gunnar Sturfelt; Andreas Jönsen; Anders A Bengtsson; Solbritt Rantapää-Dahlqvist; Emily C Baechler; Elizabeth E Brown; Graciela S Alarcón; Jeffrey C Edberg; Rosalind Ramsey-Goldman; Gerald McGwin; John D Reveille; Luis M Vilá; Robert P Kimberly; Susan Manzi; Michelle A Petri; Annette Lee; Peter K Gregersen; Michael F Seldin; Lars Rönnblom; Lindsey A Criswell; Ann-Christine Syvänen; Timothy W Behrens; Robert R Graham
Journal:  Nat Genet       Date:  2009-10-18       Impact factor: 38.330

4.  Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus.

Authors:  Jian-Wen Han; Hou-Feng Zheng; Yong Cui; Liang-Dan Sun; Dong-Qing Ye; Zhi Hu; Jin-Hua Xu; Zhi-Ming Cai; Wei Huang; Guo-Ping Zhao; Hong-Fu Xie; Hong Fang; Qian-Jin Lu; Jian-Hua Xu; Xiang-Pei Li; Yun-Feng Pan; Dan-Qi Deng; Fan-Qin Zeng; Zhi-Zhong Ye; Xiao-Yan Zhang; Qing-Wen Wang; Fei Hao; Li Ma; Xian-Bo Zuo; Fu-Sheng Zhou; Wen-Hui Du; Yi-Lin Cheng; Jian-Qiang Yang; Song-Ke Shen; Jian Li; Yu-Jun Sheng; Xiao-Xia Zuo; Wei-Fang Zhu; Fei Gao; Pei-Lian Zhang; Qing Guo; Bo Li; Min Gao; Feng-Li Xiao; Cheng Quan; Chi Zhang; Zheng Zhang; Kun-Ju Zhu; Yang Li; Da-Yan Hu; Wen-Sheng Lu; Jian-Lin Huang; Sheng-Xiu Liu; Hui Li; Yun-Qing Ren; Zai-Xing Wang; Chun-Jun Yang; Pei-Guang Wang; Wen-Ming Zhou; Yong-Mei Lv; An-Ping Zhang; Sheng-Quan Zhang; Da Lin; Yi Li; Hui Qi Low; Min Shen; Zhi-Fang Zhai; Ying Wang; Feng-Yu Zhang; Sen Yang; Jian-Jun Liu; Xue-Jun Zhang
Journal:  Nat Genet       Date:  2009-10-18       Impact factor: 38.330

5.  Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus.

Authors:  Wanling Yang; Nan Shen; Dong-Qing Ye; Qiji Liu; Yan Zhang; Xiao-Xia Qian; Nattiya Hirankarn; Dingge Ying; Hai-Feng Pan; Chi Chiu Mok; Tak Mao Chan; Raymond Woon Sing Wong; Ka Wing Lee; Mo Yin Mok; Sik Nin Wong; Alexander Moon Ho Leung; Xiang-Pei Li; Yingyos Avihingsanon; Chun-Ming Wong; Tsz Leung Lee; Marco Hok Kung Ho; Pamela Pui Wah Lee; Yuk Kwan Chang; Philip H Li; Ruo-Jie Li; Lu Zhang; Wilfred Hing Sang Wong; Irene Oi Lin Ng; Chak Sing Lau; Pak Chung Sham; Yu Lung Lau
Journal:  PLoS Genet       Date:  2010-02-12       Impact factor: 5.917

6.  SLP-76-ADAP adaptor module regulates LFA-1 mediated costimulation and T cell motility.

Authors:  Hongyan Wang; Bin Wei; Georges Bismuth; Christopher E Rudd
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-15       Impact factor: 11.205

7.  Abnormal activation of the Akt-GSK3beta signaling pathway in peripheral blood T cells from patients with systemic lupus erythematosus.

Authors:  Hongfeng Tang; Guozhen Tan; Qing Guo; Ruiping Pang; Fanqin Zeng
Journal:  Cell Cycle       Date:  2009-09-06       Impact factor: 4.534

8.  Clinical and serological correlates of anti-Sm autoantibodies in Chinese patients with systemic lupus erythematosus: 1,584 cases.

Authors:  Jin Dong Ni; Xi Yao; Hai Feng Pan; Xiang Pei Li; Jian Hua Xu; Dong Qing Ye
Journal:  Rheumatol Int       Date:  2009-02-05       Impact factor: 2.631

9.  Direct activation of protein kinases by unanchored polyubiquitin chains.

Authors:  Zong-Ping Xia; Lijun Sun; Xiang Chen; Gabriel Pineda; Xiaomo Jiang; Anirban Adhikari; Wenwen Zeng; Zhijian J Chen
Journal:  Nature       Date:  2009-08-12       Impact factor: 49.962

10.  Loci on 7p12.2, 10q21.2 and 14q11.2 are associated with risk of childhood acute lymphoblastic leukemia.

Authors:  Elli Papaemmanuil; Fay J Hosking; Jayaram Vijayakrishnan; Amy Price; Bianca Olver; Eammon Sheridan; Sally E Kinsey; Tracy Lightfoot; Eve Roman; Julie A E Irving; James M Allan; Ian P Tomlinson; Malcolm Taylor; Mel Greaves; Richard S Houlston
Journal:  Nat Genet       Date:  2009-08-16       Impact factor: 38.330

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  91 in total

1.  Identification of a New Susceptibility Locus for Systemic Lupus Erythematosus on Chromosome 12 in Individuals of European Ancestry.

Authors:  F Yesim Demirci; Xingbin Wang; Jennifer A Kelly; David L Morris; M Michael Barmada; Eleanor Feingold; Amy H Kao; Kathy L Sivils; Sasha Bernatsky; Christian Pineau; Ann E Clarke; Rosalind Ramsey-Goldman; Timothy J Vyse; Patrick M Gaffney; Susan Manzi; M Ilyas Kamboh
Journal:  Arthritis Rheumatol       Date:  2016-01       Impact factor: 10.995

Review 2.  Contribution of B-1a cells to systemic lupus erythematosus in the NZM2410 mouse model.

Authors:  Zhiwei Xu; Laurence Morel
Journal:  Ann N Y Acad Sci       Date:  2015-02-26       Impact factor: 5.691

3.  Genome-Wide Association Meta-Analysis Reveals Novel Juvenile Idiopathic Arthritis Susceptibility Loci.

Authors:  Laura A McIntosh; Miranda C Marion; Marc Sudman; Mary E Comeau; Mara L Becker; John F Bohnsack; Tasha E Fingerlin; Thomas A Griffin; J Peter Haas; Daniel J Lovell; Lisa A Maier; Peter A Nigrovic; Sampath Prahalad; Marilynn Punaro; Carlos D Rosé; Carol A Wallace; Carol A Wise; Halima Moncrieffe; Timothy D Howard; Carl D Langefeld; Susan D Thompson
Journal:  Arthritis Rheumatol       Date:  2017-10-12       Impact factor: 10.995

Review 4.  Genetic architectures of seropositive and seronegative rheumatic diseases.

Authors:  Yohei Kirino; Elaine F Remmers
Journal:  Nat Rev Rheumatol       Date:  2015-04-28       Impact factor: 20.543

Review 5.  Immunologic manifestations of autophagy.

Authors:  Vojo Deretic; Tomonori Kimura; Graham Timmins; Pope Moseley; Santosh Chauhan; Michael Mandell
Journal:  J Clin Invest       Date:  2015-01-02       Impact factor: 14.808

Review 6.  The Post-GWAS Era: How to Validate the Contribution of Gene Variants in Lupus.

Authors:  Adam J Fike; Irina Elcheva; Ziaur S M Rahman
Journal:  Curr Rheumatol Rep       Date:  2019-01-23       Impact factor: 4.592

Review 7.  The genetics and immunobiology of IgA nephropathy.

Authors:  Krzysztof Kiryluk; Jan Novak
Journal:  J Clin Invest       Date:  2014-06-02       Impact factor: 14.808

8.  Update on immunoglobulin A nephropathy, Part I: Pathophysiology.

Authors:  Maurizio Salvadori; Giuseppina Rosso
Journal:  World J Nephrol       Date:  2015-09-06

9.  A genome-wide association study in Han Chinese identifies a susceptibility locus for primary Sjögren's syndrome at 7q11.23.

Authors:  Yongzhe Li; Kunlin Zhang; Hua Chen; Fei Sun; Juanjuan Xu; Ziyan Wu; Ping Li; Liuyan Zhang; Yang Du; Haixia Luan; Xi Li; Lijun Wu; Hongbin Li; Huaxiang Wu; Xiangpei Li; Xiaomei Li; Xiao Zhang; Lu Gong; Lie Dai; Lingyun Sun; Xiaoxia Zuo; Jianhua Xu; Huiping Gong; Zhijun Li; Shengquan Tong; Min Wu; Xiaofeng Li; Weiguo Xiao; Guochun Wang; Ping Zhu; Min Shen; Shengyun Liu; Dongbao Zhao; Wei Liu; Yi Wang; Cibo Huang; Quan Jiang; Guijian Liu; Bin Liu; Shaoxian Hu; Wen Zhang; Zhuoli Zhang; Xin You; Mengtao Li; Weixin Hao; Cheng Zhao; Xiaomei Leng; Liqi Bi; Yongfu Wang; Fengxiao Zhang; Qun Shi; Wencheng Qi; Xuewu Zhang; Yuan Jia; Jinmei Su; Qin Li; Yong Hou; Qingjun Wu; Dong Xu; Wenjie Zheng; Miaojia Zhang; Qian Wang; Yunyun Fei; Xuan Zhang; Jing Li; Ying Jiang; Xinping Tian; Lidan Zhao; Li Wang; Bin Zhou; Yang Li; Yan Zhao; Xiaofeng Zeng; Jurg Ott; Jing Wang; Fengchun Zhang
Journal:  Nat Genet       Date:  2013-10-06       Impact factor: 38.330

Review 10.  The TNF Receptor Superfamily in Co-stimulating and Co-inhibitory Responses.

Authors:  Lindsay K Ward-Kavanagh; Wai Wai Lin; John R Šedý; Carl F Ware
Journal:  Immunity       Date:  2016-05-17       Impact factor: 31.745

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