Literature DB >> 20944595

The NIH Roadmap Epigenomics Mapping Consortium.

Bradley E Bernstein1, John A Stamatoyannopoulos, Joseph F Costello, Bing Ren, Aleksandar Milosavljevic, Alexander Meissner, Manolis Kellis, Marco A Marra, Arthur L Beaudet, Joseph R Ecker, Peggy J Farnham, Martin Hirst, Eric S Lander, Tarjei S Mikkelsen, James A Thomson.   

Abstract

The NIH Roadmap Epigenomics Mapping Consortium aims to produce a public resource of epigenomic maps for stem cells and primary ex vivo tissues selected to represent the normal counterparts of tissues and organ systems frequently involved in human disease.

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Year:  2010        PMID： 20944595      PMCID： PMC3607281          DOI： 10.1038/nbt1010-1045

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


  30 in total

Review 1.  Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals.

Authors:  Rudolf Jaenisch; Adrian Bird
Journal:  Nat Genet       Date:  2003-03       Impact factor: 38.330

Review 2.  Heterochromatin and epigenetic control of gene expression.

Authors:  Shiv I S Grewal; Danesh Moazed
Journal:  Science       Date:  2003-08-08       Impact factor: 47.728

Review 3.  Polycomb silencing mechanisms and the management of genomic programmes.

Authors:  Yuri B Schwartz; Vincenzo Pirrotta
Journal:  Nat Rev Genet       Date:  2007-01       Impact factor: 53.242

Review 4.  Chromatin modifications and their function.

Authors:  Tony Kouzarides
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 5.  Noncoding RNAs and gene silencing.

Authors:  Mikel Zaratiegui; Danielle V Irvine; Robert A Martienssen
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

6.  The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome.

Authors:  R S Hansen; C Wijmenga; P Luo; A M Stanek; T K Canfield; C M Weemaes; S M Gartler
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

Review 7.  Mechanisms of transformation by MLL.

Authors:  Jay L Hess
Journal:  Crit Rev Eukaryot Gene Expr       Date:  2004       Impact factor: 1.807

Review 8.  The mammalian epigenome.

Authors:  Bradley E Bernstein; Alexander Meissner; Eric S Lander
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 9.  The epigenomics of cancer.

Authors:  Peter A Jones; Stephen B Baylin
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

10.  DNA methylation profiling of human chromosomes 6, 20 and 22.

Authors:  Florian Eckhardt; Joern Lewin; Rene Cortese; Vardhman K Rakyan; John Attwood; Matthias Burger; John Burton; Tony V Cox; Rob Davies; Thomas A Down; Carolina Haefliger; Roger Horton; Kevin Howe; David K Jackson; Jan Kunde; Christoph Koenig; Jennifer Liddle; David Niblett; Thomas Otto; Roger Pettett; Stefanie Seemann; Christian Thompson; Tony West; Jane Rogers; Alex Olek; Kurt Berlin; Stephan Beck
Journal:  Nat Genet       Date:  2006-10-29       Impact factor: 38.330
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  880 in total

Review 1.  Bioinformatics for personal genome interpretation.

Authors:  Emidio Capriotti; Nathan L Nehrt; Maricel G Kann; Yana Bromberg
Journal:  Brief Bioinform       Date:  2012-01-13       Impact factor: 11.622

2.  Building stem-cell genomics in California and beyond.

Authors:  Natalie D Dewitt; Michael P Yaffe; Alan Trounson
Journal:  Nat Biotechnol       Date:  2012-01-09       Impact factor: 54.908

Review 3.  A decade of exploring the cancer epigenome - biological and translational implications.

Authors:  Stephen B Baylin; Peter A Jones
Journal:  Nat Rev Cancer       Date:  2011-09-23       Impact factor: 60.716

4.  Transcription factors, coregulators, and epigenetic marks are linearly correlated and highly redundant.

Authors:  Tobias Ahsendorf; Franz-Josef Müller; Ved Topkar; Jeremy Gunawardena; Roland Eils
Journal:  PLoS One       Date:  2017-12-07       Impact factor: 3.240

5.  MYC-Regulated Mevalonate Metabolism Maintains Brain Tumor-Initiating Cells.

Authors:  Xiuxing Wang; Zhi Huang; Qiulian Wu; Briana C Prager; Stephen C Mack; Kailin Yang; Leo J Y Kim; Ryan C Gimple; Yu Shi; Sisi Lai; Qi Xie; Tyler E Miller; Christopher G Hubert; Anne Song; Zhen Dong; Wenchao Zhou; Xiaoguang Fang; Zhe Zhu; Vaidehi Mahadev; Shideng Bao; Jeremy N Rich
Journal:  Cancer Res       Date:  2017-07-20       Impact factor: 12.701

6.  Exploring the underlying biology of intrinsic cardiorespiratory fitness through integrative analysis of genomic variants and muscle gene expression profiling.

Authors:  Sujoy Ghosh; Monalisa Hota; Xiaoran Chai; Jencee Kiranya; Palash Ghosh; Zihong He; Jonathan J Ruiz-Ramie; Mark A Sarzynski; Claude Bouchard
Journal:  J Appl Physiol (1985)       Date:  2019-01-03

Review 7.  Using chromatin marks to interpret and localize genetic associations to complex human traits and diseases.

Authors:  Gosia Trynka; Soumya Raychaudhuri
Journal:  Curr Opin Genet Dev       Date:  2013-11-25       Impact factor: 5.578

8.  Genome-Wide Occupancy Profiling Reveals Critical Roles of FoxO1 in Regulating Extracellular Matrix and Circadian Rhythm Genes in Human Chondrocytes.

Authors:  Tomas Duffy; Hirofumi Bekki; Martin K Lotz
Journal:  Arthritis Rheumatol       Date:  2020-08-09       Impact factor: 10.995

9.  Epigenomic elements enriched in the promoters of autoimmunity susceptibility genes.

Authors:  Mikhail G Dozmorov; Jonathan D Wren; Marta E Alarcón-Riquelme
Journal:  Epigenetics       Date:  2013-11-08       Impact factor: 4.528

10.  A common functional regulatory variant at a type 2 diabetes locus upregulates ARAP1 expression in the pancreatic beta cell.

Authors:  Jennifer R Kulzer; Michael L Stitzel; Mario A Morken; Jeroen R Huyghe; Christian Fuchsberger; Johanna Kuusisto; Markku Laakso; Michael Boehnke; Francis S Collins; Karen L Mohlke
Journal:  Am J Hum Genet       Date:  2014-01-16       Impact factor: 11.025
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