Literature DB >> 27385633

Sensitive proton-detected solid-state NMR spectroscopy of large proteins with selective CH3 labelling: application to the 50S ribosome subunit.

Vilius Kurauskas1, Elodie Crublet1, Pavel Macek1, Rime Kerfah2, Diego F Gauto1, Jérôme Boisbouvier1, Paul Schanda1.   

Abstract

Solid-state NMR spectroscopy allows the characterization of the structure, interactions and dynamics of insoluble and/or very large proteins. Sensitivity and resolution are often major challenges for obtaining atomic-resolution information, in particular for very large protein complexes. Here we show that the use of deuterated, specifically CH3-labelled proteins result in significant sensitivity gains compared to previously employed CHD2 labelling, while line widths increase only marginally. We apply this labelling strategy to a 468 kDa-large dodecameric aminopeptidase, TET2, and the 1.6 MDa-large 50S ribosome subunit of Thermus thermophilus.

Entities:  

Year:  2016        PMID: 27385633      PMCID: PMC4958370          DOI: 10.1039/c6cc04484k

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  21 in total

1.  Conformation and dynamics of ribosomal stalk protein L12 in solution and on the ribosome.

Authors:  Frans A A Mulder; Lamine Bouakaz; Anna Lundell; Musturi Venkataramana; Anders Liljas; Mikael Akke; Suparna Sanyal
Journal:  Biochemistry       Date:  2004-05-25       Impact factor: 3.162

Review 2.  Experimental approaches for NMR studies of side-chain dynamics in high-molecular-weight proteins.

Authors:  Devon Sheppard; Remco Sprangers; Vitali Tugarinov
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-08-14       Impact factor: 9.795

3.  Solution NMR of supramolecular complexes: providing new insights into function.

Authors:  Remco Sprangers; Algirdas Velyvis; Lewis E Kay
Journal:  Nat Methods       Date:  2007-09       Impact factor: 28.547

4.  Solid-state NMR of proteins sedimented by ultracentrifugation.

Authors:  Ivano Bertini; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Bernd Reif; Paola Turano
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

5.  Site-directed methyl group labeling as an NMR probe of structure and dynamics in supramolecular protein systems: applications to the proteasome and to the ClpP protease.

Authors:  Tomasz L Religa; Amy M Ruschak; Rina Rosenzweig; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2011-05-20       Impact factor: 15.419

6.  High resolution 1H detected 1H,13C correlation spectra in MAS solid-state NMR using deuterated proteins with selective 1H,2H isotopic labeling of methyl groups.

Authors:  Vipin Agarwal; Anne Diehl; Nikolai Skrynnikov; Bernd Reif
Journal:  J Am Chem Soc       Date:  2006-10-04       Impact factor: 15.419

7.  Structure and dynamics of a ribosome-bound nascent chain by NMR spectroscopy.

Authors:  Shang-Te Danny Hsu; Paola Fucini; Lisa D Cabrita; Hélène Launay; Christopher M Dobson; John Christodoulou
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-10       Impact factor: 11.205

8.  Atomic model of the type III secretion system needle.

Authors:  Antoine Loquet; Nikolaos G Sgourakis; Rashmi Gupta; Karin Giller; Dietmar Riedel; Christian Goosmann; Christian Griesinger; Michael Kolbe; David Baker; Stefan Becker; Adam Lange
Journal:  Nature       Date:  2012-05-20       Impact factor: 49.962

9.  A structural ensemble of a ribosome-nascent chain complex during cotranslational protein folding.

Authors:  Lisa D Cabrita; AnaÏs M E Cassaignau; Helene M M Launay; Christopher A Waudby; Tomasz Wlodarski; Carlo Camilloni; Maria-Evangelia Karyadi; Amy L Robertson; Xiaolin Wang; Anne S Wentink; Luke Goodsell; Cheryl A Woolhead; Michele Vendruscolo; Christopher M Dobson; John Christodoulou
Journal:  Nat Struct Mol Biol       Date:  2016-02-29       Impact factor: 15.369

Review 10.  Studying Dynamics by Magic-Angle Spinning Solid-State NMR Spectroscopy: Principles and Applications to Biomolecules.

Authors:  Paul Schanda; Matthias Ernst
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-15       Impact factor: 9.795

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  10 in total

1.  MAS dependent sensitivity of different isotopomers in selectively methyl protonated protein samples in solid state NMR.

Authors:  Kai Xue; Riddhiman Sarkar; Zdenek Tosner; Daniela Lalli; Carina Motz; Benita Koch; Guido Pintacuda; Bernd Reif
Journal:  J Biomol NMR       Date:  2019-09-12       Impact factor: 2.835

Review 2.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

Review 3.  Single-Molecule Fluorescence Applied to Translation.

Authors:  Arjun Prabhakar; Elisabetta Viani Puglisi; Joseph D Puglisi
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

4.  Proton-Detected Solid-State NMR Spectroscopy of a Zinc Diffusion Facilitator Protein in Native Nanodiscs.

Authors:  Beate Bersch; Jonas M Dörr; Audrey Hessel; J Antoinette Killian; Paul Schanda
Journal:  Angew Chem Int Ed Engl       Date:  2017-01-27       Impact factor: 15.336

5.  Atomic structural details of a protein grafted onto gold nanoparticles.

Authors:  Stefano Giuntini; Linda Cerofolini; Enrico Ravera; Marco Fragai; Claudio Luchinat
Journal:  Sci Rep       Date:  2017-12-20       Impact factor: 4.379

6.  Limits of Resolution and Sensitivity of Proton Detected MAS Solid-State NMR Experiments at 111 kHz in Deuterated and Protonated Proteins.

Authors:  Kai Xue; Riddhiman Sarkar; Carina Motz; Sam Asami; Diana C Rodriguez Camargo; Venita Decker; Sebastian Wegner; Zdenek Tosner; Bernd Reif
Journal:  Sci Rep       Date:  2017-08-07       Impact factor: 4.379

7.  Protein-Protein Interfaces Probed by Methyl Labeling and Proton-Detected Solid-State NMR Spectroscopy.

Authors:  Maximilian Zinke; Pascal Fricke; Sascha Lange; Sophie Zinn-Justin; Adam Lange
Journal:  Chemphyschem       Date:  2018-06-27       Impact factor: 3.102

8.  NMR Assignment of Methyl Groups in Immobilized Proteins Using Multiple-Bond 13C Homonuclear Transfers, Proton Detection, and Very Fast MAS.

Authors:  Piotr Paluch; Rafal Augustyniak; Mai-Liis Org; Kalju Vanatalu; Ats Kaldma; Ago Samoson; Jan Stanek
Journal:  Front Mol Biosci       Date:  2022-03-29

9.  Proton Detected Solid-State NMR of Membrane Proteins at 28 Tesla (1.2 GHz) and 100 kHz Magic-Angle Spinning.

Authors:  Evgeny Nimerovsky; Kumar Tekwani Movellan; Xizhou Cecily Zhang; Marcel C Forster; Eszter Najbauer; Kai Xue; Rıza Dervişoǧlu; Karin Giller; Christian Griesinger; Stefan Becker; Loren B Andreas
Journal:  Biomolecules       Date:  2021-05-18

10.  Local Deuteration Enables NMR Observation of Methyl Groups in Proteins from Eukaryotic and Cell-Free Expression Systems.

Authors:  Abhinav Dubey; Nikolay Stoyanov; Thibault Viennet; Sandeep Chhabra; Shantha Elter; Jan Borggräfe; Aldino Viegas; Radosław P Nowak; Nikola Burdzhiev; Ognyan Petrov; Eric S Fischer; Manuel Etzkorn; Vladimir Gelev; Haribabu Arthanari
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-06       Impact factor: 15.336

  10 in total

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