Literature DB >> 27110043

Studying Dynamics by Magic-Angle Spinning Solid-State NMR Spectroscopy: Principles and Applications to Biomolecules.

Paul Schanda1, Matthias Ernst2.   

Abstract

Magic-angle spinning solid-state NMR spectroscopy is an important technique to study molecular structure, dynamics and interactions, and is rapidly gaining importance in biomolecular sciences. Here we provide an overview of experimental approaches to study molecular dynamics by MAS solid-state NMR, with an emphasis on the underlying theoretical concepts and differences of MAS solid-state NMR compared to solution-state NMR. The theoretical foundations of nuclear spin relaxation are revisited, focusing on the particularities of spin relaxation in solid samples under magic-angle spinning. We discuss the range of validity of Redfield theory, as well as the inherent multi-exponential behavior of relaxation in solids. Experimental challenges for measuring relaxation parameters in MAS solid-state NMR and a few recently proposed relaxation approaches are discussed, which provide information about time scales and amplitudes of motions ranging from picoseconds to milliseconds. We also discuss the theoretical basis and experimental measurements of anisotropic interactions (chemical-shift anisotropies, dipolar and quadrupolar couplings), which give direct information about the amplitude of motions. The potential of combining relaxation data with such measurements of dynamically-averaged anisotropic interactions is discussed. Although the focus of this review is on the theoretical foundations of dynamics studies rather than their application, we close by discussing a small number of recent dynamics studies, where the dynamic properties of proteins in crystals are compared to those in solution.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27110043      PMCID: PMC4836562          DOI: 10.1016/j.pnmrs.2016.02.001

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN: 0079-6565            Impact factor:   9.795


  122 in total

1.  Cellular solid-state nuclear magnetic resonance spectroscopy.

Authors:  Marie Renault; Ria Tommassen-van Boxtel; Martine P Bos; Jan Andries Post; Jan Tommassen; Marc Baldus
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

2.  Measurement of site-specific 13C spin-lattice relaxation in a crystalline protein.

Authors:  Józef R Lewandowski; Julien Sein; Hans Jürgen Sass; Stephan Grzesiek; Martin Blackledge; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

3.  Solid-state protein-structure determination with proton-detected triple-resonance 3D magic-angle-spinning NMR spectroscopy.

Authors:  Donghua H Zhou; John J Shea; Andrew J Nieuwkoop; W Trent Franks; Benjamin J Wylie; Charles Mullen; Dennis Sandoz; Chad M Rienstra
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

4.  Quantitative measurement of differential 15N-H(alpha/beta)T2 relaxation rates in a perdeuterated protein by MAS solid-state NMR spectroscopy.

Authors:  Veniamin Chevelkov; Anne Diehl; Bernd Reif
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

5.  Solid-state NMR measurements of asymmetric dipolar couplings provide insight into protein side-chain motion.

Authors:  Paul Schanda; Matthias Huber; Jérôme Boisbouvier; Beat H Meier; Matthias Ernst
Journal:  Angew Chem Int Ed Engl       Date:  2011-09-14       Impact factor: 15.336

6.  Direct measurement of angles between bond vectors in high-resolution NMR.

Authors:  B Reif; M Hennig; C Griesinger
Journal:  Science       Date:  1997-05-23       Impact factor: 47.728

7.  Improvement of resolution in solid state NMR spectra with J-decoupling: an analysis of lineshape contributions in uniformly 13C-enriched amino acids and proteins.

Authors:  Tatyana I Igumenova; Ann E McDermott
Journal:  J Magn Reson       Date:  2003-10       Impact factor: 2.229

8.  Solid-state NMR in macromolecular systems: insights on how molecular entities move.

Authors:  Michael Ryan Hansen; Robert Graf; Hans Wolfgang Spiess
Journal:  Acc Chem Res       Date:  2013-03-13       Impact factor: 22.384

9.  Dynamics of reassembled thioredoxin studied by magic angle spinning NMR: snapshots from different time scales.

Authors:  Jun Yang; Maria Luisa Tasayco; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

10.  Site-resolved measurement of microsecond-to-millisecond conformational-exchange processes in proteins by solid-state NMR spectroscopy.

Authors:  Martin Tollinger; Astrid C Sivertsen; Beat H Meier; Matthias Ernst; Paul Schanda
Journal:  J Am Chem Soc       Date:  2012-08-28       Impact factor: 15.419

View more
  51 in total

1.  Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.

Authors:  Petra Rovó; Colin A Smith; Diego Gauto; Bert L de Groot; Paul Schanda; Rasmus Linser
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

Review 2.  Basic experiments in 2H static NMR for the characterization of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Methods       Date:  2018-04-27       Impact factor: 3.608

3.  Protein dynamics in the solid-state from 2H NMR lineshape analysis. III. MOMD in the presence of Magic Angle Spinning.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  Solid State Nucl Magn Reson       Date:  2017-11-21       Impact factor: 2.293

4.  Aromatic Ring Dynamics, Thermal Activation, and Transient Conformations of a 468 kDa Enzyme by Specific 1H-13C Labeling and Fast Magic-Angle Spinning NMR.

Authors:  Diego F Gauto; Pavel Macek; Alessandro Barducci; Hugo Fraga; Audrey Hessel; Tsutomu Terauchi; David Gajan; Yohei Miyanoiri; Jerome Boisbouvier; Roman Lichtenecker; Masatsune Kainosho; Paul Schanda
Journal:  J Am Chem Soc       Date:  2019-07-05       Impact factor: 15.419

5.  Effect of Post-Translational Modifications and Mutations on Amyloid-β Fibrils Dynamics at N Terminus.

Authors:  Liliya Vugmeyster; Dan F Au; Dmitry Ostrovsky; Brian Kierl; Riqiang Fu; Zhi-Wen Hu; Wei Qiang
Journal:  Biophys J       Date:  2019-09-12       Impact factor: 4.033

6.  Microsecond Protein Dynamics from Combined Bloch-McConnell and Near-Rotary-Resonance R1p Relaxation-Dispersion MAS NMR.

Authors:  Dominique Marion; Diego F Gauto; Isabel Ayala; Karine Giandoreggio-Barranco; Paul Schanda
Journal:  Chemphyschem       Date:  2018-12-20       Impact factor: 3.102

7.  Conformational Dynamics in the Core of Human Y145Stop Prion Protein Amyloid Probed by Relaxation Dispersion NMR.

Authors:  Matthew D Shannon; Theint Theint; Dwaipayan Mukhopadhyay; Krystyna Surewicz; Witold K Surewicz; Dominique Marion; Paul Schanda; Christopher P Jaroniec
Journal:  Chemphyschem       Date:  2018-11-07       Impact factor: 3.102

8.  Phenyl-Ring Dynamics in Amyloid Fibrils and Proteins: The Microscopic-Order-Macroscopic-Disorder Perspective.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2018-09-10       Impact factor: 2.991

9.  Rapid automated determination of chemical shift anisotropy values in the carbonyl and carboxyl groups of fd-y21m bacteriophage using solid state NMR.

Authors:  Tom Aharoni; Amir Goldbourt
Journal:  J Biomol NMR       Date:  2018-08-23       Impact factor: 2.835

10.  Structural Model of the Proline-Rich Domain of Huntingtin Exon-1 Fibrils.

Authors:  Alexander S Falk; José M Bravo-Arredondo; Jobin Varkey; Sayuri Pacheco; Ralf Langen; Ansgar B Siemer
Journal:  Biophys J       Date:  2020-10-20       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.