Literature DB >> 27362341

Defining the Clinical Value of a Genomic Diagnosis in the Era of Next-Generation Sequencing.

Natasha T Strande1, Jonathan S Berg1.   

Abstract

As with all fields of medicine, the first step toward medical management of genetic disorders is obtaining an accurate diagnosis, which often requires testing at the molecular level. Unfortunately, given the large number of genetic conditions without a specific intervention, only rarely does a genetic diagnosis alter patient management-which raises the question, what is the added value of obtaining a molecular diagnosis? Given the fast-paced advancement of genomic technologies, this is an important question to address in the context of genome-scale testing. Here, we address the value of establishing a diagnosis using genome-scale testing and highlight the benefits and drawbacks of such testing. We also review and compare recent major studies implementing genome-scale sequencing methods to identify a molecular diagnosis in cohorts manifesting a broad range of Mendelian monogenic disorders. Finally, we discuss potential future applications of genomic sequencing, such as screening for rare conditions.

Entities:  

Keywords:  clinical diagnostics; genomic medicine; monogenic disorders; next-generation sequencing; whole-exome sequencing; whole-genome sequencing

Mesh:

Year:  2016        PMID: 27362341      PMCID: PMC7251520          DOI: 10.1146/annurev-genom-083115-022348

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   8.929


  135 in total

Review 1.  Next generation sequencing and the future of genetic diagnosis.

Authors:  Katja Lohmann; Christine Klein
Journal:  Neurotherapeutics       Date:  2014-10       Impact factor: 7.620

2.  Post-mortem Whole exome sequencing with gene-specific analysis for autopsy-negative sudden unexplained death in the young: a case series.

Authors:  Nupoor Narula; David J Tester; Anna Paulmichl; Joseph J Maleszewski; Michael J Ackerman
Journal:  Pediatr Cardiol       Date:  2014-12-13       Impact factor: 1.655

3.  Whole-exome sequencing as a diagnostic tool in a family with episodic ataxia type 1.

Authors:  Pawel Tacik; Kimberly J Guthrie; Audrey J Strongosky; Daniel F Broderick; Douglas L Riegert-Johnson; Sha Tang; Dima El-Khechen; Alexander S Parker; Owen A Ross; Zbigniew K Wszolek
Journal:  Mayo Clin Proc       Date:  2015-02-03       Impact factor: 7.616

Review 4.  Whole-exome sequencing as a diagnostic tool: current challenges and future opportunities.

Authors:  Martine Tetreault; Eric Bareke; Javad Nadaf; Najmeh Alirezaie; Jacek Majewski
Journal:  Expert Rev Mol Diagn       Date:  2015-05-09       Impact factor: 5.225

5.  The diagnostic utility of exome sequencing in Joubert syndrome and related disorders.

Authors:  Yoshinori Tsurusaki; Yasuko Kobayashi; Masataka Hisano; Shuichi Ito; Hiroshi Doi; Mitsuko Nakashima; Hirotomo Saitsu; Naomichi Matsumoto; Noriko Miyake
Journal:  J Hum Genet       Date:  2012-10-04       Impact factor: 3.172

6.  Enhanced utility of family-centered diagnostic exome sequencing with inheritance model-based analysis: results from 500 unselected families with undiagnosed genetic conditions.

Authors:  Kelly D Farwell; Layla Shahmirzadi; Dima El-Khechen; Zöe Powis; Elizabeth C Chao; Brigette Tippin Davis; Ruth M Baxter; Wenqi Zeng; Cameron Mroske; Melissa C Parra; Stephanie K Gandomi; Ira Lu; Xiang Li; Hong Lu; Hsiao-Mei Lu; David Salvador; David Ruble; Monica Lao; Soren Fischbach; Jennifer Wen; Shela Lee; Aaron Elliott; Charles L M Dunlop; Sha Tang
Journal:  Genet Med       Date:  2014-11-13       Impact factor: 8.822

7.  Comprehensive gene panels provide advantages over clinical exome sequencing for Mendelian diseases.

Authors: 
Journal:  Genome Biol       Date:  2015-06-26       Impact factor: 13.583

Review 8.  Clinical applications of next generation sequencing in cancer: from panels, to exomes, to genomes.

Authors:  Tony Shen; Stefan Hans Pajaro-Van de Stadt; Nai Chien Yeat; Jimmy C-H Lin
Journal:  Front Genet       Date:  2015-06-17       Impact factor: 4.599

9.  High Diagnostic Yield of Whole Exome Sequencing in Participants With Retinal Dystrophies in a Clinical Ophthalmology Setting.

Authors:  Kristy Lee; Jonathan S Berg; Laura Milko; Kristy Crooks; Mei Lu; Chris Bizon; Phillips Owen; Kirk C Wilhelmsen; Karen E Weck; James P Evans; Seema Garg
Journal:  Am J Ophthalmol       Date:  2015-04-22       Impact factor: 5.258

10.  ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing.

Authors:  Robert C Green; Jonathan S Berg; Wayne W Grody; Sarah S Kalia; Bruce R Korf; Christa L Martin; Amy L McGuire; Robert L Nussbaum; Julianne M O'Daniel; Kelly E Ormond; Heidi L Rehm; Michael S Watson; Marc S Williams; Leslie G Biesecker
Journal:  Genet Med       Date:  2013-06-20       Impact factor: 8.822

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  16 in total

1.  Whole Exome Sequencing Identifies Truncating Variants in Nuclear Envelope Genes in Patients With Cardiovascular Disease.

Authors:  Gloria T Haskell; Brian C Jensen; Leigh Ann Samsa; Daniel Marchuk; Wei Huang; Cecile Skrzynia; Christian Tilley; Bryce A Seifert; Edgar A Rivera-Muñoz; Beverly Koller; Kirk C Wilhelmsen; Jiandong Liu; Hassan Alhosaini; Karen E Weck; James P Evans; Jonathan S Berg
Journal:  Circ Cardiovasc Genet       Date:  2017-06

Review 2.  [Genetic testing to prevent sudden cardiac death].

Authors:  B Stallmeyer; S Dittmann; E Schulze-Bahr
Journal:  Internist (Berl)       Date:  2018-08       Impact factor: 0.743

Review 3.  Genomic medicine for kidney disease.

Authors:  Emily E Groopman; Hila Milo Rasouly; Ali G Gharavi
Journal:  Nat Rev Nephrol       Date:  2018-01-08       Impact factor: 28.314

Review 4.  Towards precision nephrology: the opportunities and challenges of genomic medicine.

Authors:  Jordan G Nestor; Emily E Groopman; Ali G Gharavi
Journal:  J Nephrol       Date:  2017-10-17       Impact factor: 3.902

Review 5.  Comprehensive genetic testing approaches as the basis for personalized management of growth disturbances: current status and perspectives.

Authors:  Danielle Christine Maria van der Kaay; Anne Rochtus; Gerhard Binder; Ingo Kurth; Dirk Prawitt; Irène Netchine; Gudmundur Johannsson; Anita C S Hokken-Koelega; Miriam Elbracht; Thomas Eggermann
Journal:  Endocr Connect       Date:  2022-10-10       Impact factor: 3.221

6.  An Age-Based Framework for Evaluating Genome-Scale Sequencing Results in Newborn Screening.

Authors:  Laura V Milko; Julianne M O'Daniel; Daniela M DeCristo; Stephanie B Crowley; Ann Katherine M Foreman; Kathleen E Wallace; Lonna F Mollison; Natasha T Strande; Zahra S Girnary; Lacey J Boshe; Arthur S Aylsworth; Muge Gucsavas-Calikoglu; Dianne M Frazier; Neeta L Vora; Myra I Roche; Bradford C Powell; Cynthia M Powell; Jonathan S Berg
Journal:  J Pediatr       Date:  2019-03-07       Impact factor: 4.406

Review 7.  Genetic Counseling and Genome Sequencing in Pediatric Rare Disease.

Authors:  Alison M Elliott
Journal:  Cold Spring Harb Perspect Med       Date:  2020-03-02       Impact factor: 6.915

Review 8.  Navigating the nuances of clinical sequence variant interpretation in Mendelian disease.

Authors:  Natasha T Strande; Sarah E Brnich; Tamara S Roman; Jonathan S Berg
Journal:  Genet Med       Date:  2018-07-10       Impact factor: 8.822

9.  Diagnostic Utility of Exome Sequencing for Kidney Disease.

Authors:  Emily E Groopman; Maddalena Marasa; Sophia Cameron-Christie; Slavé Petrovski; Vimla S Aggarwal; Hila Milo-Rasouly; Yifu Li; Junying Zhang; Jordan Nestor; Priya Krithivasan; Wan Yee Lam; Adele Mitrotti; Stacy Piva; Byum H Kil; Debanjana Chatterjee; Rachel Reingold; Drew Bradbury; Michael DiVecchia; Holly Snyder; Xueru Mu; Karla Mehl; Olivia Balderes; David A Fasel; Chunhua Weng; Jai Radhakrishnan; Pietro Canetta; Gerald B Appel; Andrew S Bomback; Wooin Ahn; Natalie S Uy; Shumyle Alam; David J Cohen; Russell J Crew; Geoffrey K Dube; Maya K Rao; Sitharthan Kamalakaran; Brett Copeland; Zhong Ren; Joshua Bridgers; Colin D Malone; Caroline M Mebane; Neha Dagaonkar; Bengt C Fellström; Carolina Haefliger; Sumit Mohan; Simone Sanna-Cherchi; Krzysztof Kiryluk; Jan Fleckner; Ruth March; Adam Platt; David B Goldstein; Ali G Gharavi
Journal:  N Engl J Med       Date:  2018-12-26       Impact factor: 176.079

10.  Exploring the importance of case-level clinical information for variant interpretation.

Authors:  Jonathan S Berg
Journal:  Genet Med       Date:  2016-08-25       Impact factor: 8.822

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