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Literature DB >> 2722746

High homology between 6-aminohexanoate-cyclic-dimer hydrolases of Flavobacterium and Pseudomonas strains.

K Tsuchiya¹, S Fukuyama, N Kanzaki, K Kanagawa, S Negoro, H Okada.

Abstract

The nucleotide sequences of the genes for 6-aminohexanoate-cyclic-dimer hydrolases of Flavobacterium sp. strain K172 (F-nylA) and Pseudomonas sp. NK87 (P-nylA), enzymes essential for the degradation of a by-product of the nylon-6 industry, were obtained by the dideoxynucleotide chain-termination method. A 1,479-base-pair open reading frame starting at a GTG and terminating at a TGA was found for the both of the genes. The P-nylA and F-nylA genes encoded polypeptides of 493 amino acids and had only 10 base substitutions in the coding region, which caused seven amino acid substitutions.

Entities: Chemical Gene Species

Mesh：

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Year: 1989 PMID： 2722746 PMCID： PMC210035 DOI： 10.1128/jb.171.6.3187-3191.1989

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

21 in total

1. 6-Aminohexanoic acid cyclic dimer hydrolase. A new cyclic amide hydrolase produced by Achromobacter guttatus KI74.

Authors: S Kinoshita; S Negoro; M Muramatsu; V S Bisaria; S Sawada; H Okada
Journal: Eur J Biochem Date: 1977-11-01

2. A rapid alkaline extraction procedure for screening recombinant plasmid DNA.

Authors: H C Birnboim; J Doly
Journal: Nucleic Acids Res Date: 1979-11-24 Impact factor: 16.971

3. Preparative and analytical purification of DNA from agarose.

Authors: B Vogelstein; D Gillespie
Journal: Proc Natl Acad Sci U S A Date: 1979-02 Impact factor: 11.205

4. Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors: A M Maxam; W Gilbert
Journal: Methods Enzymol Date: 1980 Impact factor: 1.600

5. Plasmid control of 6-aminohexanoic acid cyclic dimer degradation enzymes of Flavobacterium sp. KI72.

Authors: S Negoro; H Shinagawa; A Nakata; S Kinoshita; T Hatozaki; H Okada
Journal: J Bacteriol Date: 1980-07 Impact factor: 3.490

6. Plasmid dependence of Pseudomonas sp. strain NK87 enzymes that degrade 6-aminohexanoate-cyclic dimer.

Authors: K Kanagawa; S Negoro; N Takada; H Okada
Journal: J Bacteriol Date: 1989-06 Impact factor: 3.490

7. Nonchromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R-factor DNA.

Authors: S N Cohen; A C Chang; L Hsu
Journal: Proc Natl Acad Sci U S A Date: 1972-08 Impact factor: 11.205

8. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.

Authors: F Bolivar; R L Rodriguez; P J Greene; M C Betlach; H L Heyneker; H W Boyer; J H Crosa; S Falkow
Journal: Gene Date: 1977 Impact factor: 3.688

9. Purification and characterization of 6-aminohexanoic-acid-oligomer hydrolase of Flavobacterium sp. Ki72.

Authors: S Kinoshita; T Terada; T Taniguchi; Y Takene; S Masuda; N Matsunaga; H Okada
Journal: Eur J Biochem Date: 1981-06-01

10. DNA sequencing with chain-terminating inhibitors.

Authors: F Sanger; S Nicklen; A R Coulson
Journal: Proc Natl Acad Sci U S A Date: 1977-12 Impact factor: 11.205

15 in total

1. Identification of active sites in amidase: evolutionary relationship between amide bond- and peptide bond-cleaving enzymes.

Authors: M Kobayashi; Y Fujiwara; M Goda; H Komeda; S Shimizu
Journal: Proc Natl Acad Sci U S A Date: 1997-10-28 Impact factor: 11.205

2. Crystallization and X-ray diffraction analysis of 6-aminohexanoate-cyclic-dimer hydrolase from Arthrobacter sp. KI72.

Authors: Kengo Yasuhira; Yuki Uedo; Naoki Shibata; Seiji Negoro; Masahiro Takeo; Yoshiki Higuchi
Journal: Acta Crystallogr Sect F Struct Biol Cryst Commun Date: 2006-11-04

3. X-ray crystallographic analysis of the 6-aminohexanoate cyclic dimer hydrolase: catalytic mechanism and evolution of an enzyme responsible for nylon-6 byproduct degradation.

Authors: Kengo Yasuhira; Naoki Shibata; Go Mongami; Yuki Uedo; Yu Atsumi; Yasuyuki Kawashima; Atsushi Hibino; Yusuke Tanaka; Young-Ho Lee; Dai-ichiro Kato; Masahiro Takeo; Yoshiki Higuchi; Seiji Negoro
Journal: J Biol Chem Date: 2009-11-03 Impact factor: 5.157

4. A possible origin of newly-born bacterial genes: significance of GC-rich nonstop frame on antisense strand.

Authors: K Ikehara; F Amada; S Yoshida; Y Mikata; A Tanaka
Journal: Nucleic Acids Res Date: 1996-11-01 Impact factor: 16.971

Review 5. The nylon oligomer biodegradation system of Flavobacterium and Pseudomonas.

Authors: S Negoro; K Kato; K Fujiyama; H Okada
Journal: Biodegradation Date: 1994-12 Impact factor: 3.909

6. Nylon oligomer degradation gene, nylC, on plasmid pOAD2 from a Flavobacterium strain encodes endo-type 6-aminohexanoate oligomer hydrolase: purification and characterization of the nylC gene product.

Authors: S Kakudo; S Negoro; I Urabe; H Okada
Journal: Appl Environ Microbiol Date: 1993-11 Impact factor: 4.792

7. Insertion sequence IS6100 on plasmid pOAD2, which degrades nylon oligomers.

Authors: K Kato; K Ohtsuki; H Mitsuda; T Yomo; S Negoro; I Urabe
Journal: J Bacteriol Date: 1994-02 Impact factor: 3.490

8. Purification, cloning, and primary structure of a new enantiomer-selective amidase from a Rhodococcus strain: structural evidence for a conserved genetic coupling with nitrile hydratase.

Authors: J F Mayaux; E Cerbelaud; F Soubrier; P Yeh; F Blanche; D Pétré
Journal: J Bacteriol Date: 1991-11 Impact factor: 3.490

9. Plasmid dependence of Pseudomonas sp. strain NK87 enzymes that degrade 6-aminohexanoate-cyclic dimer.

Authors: K Kanagawa; S Negoro; N Takada; H Okada
Journal: J Bacteriol Date: 1989-06 Impact factor: 3.490

10. A new nylon oligomer degradation gene (nylC) on plasmid pOAD2 from a Flavobacterium sp.

Authors: S Negoro; S Kakudo; I Urabe; H Okada
Journal: J Bacteriol Date: 1992-12 Impact factor: 3.490