Literature DB >> 8285701

Nylon oligomer degradation gene, nylC, on plasmid pOAD2 from a Flavobacterium strain encodes endo-type 6-aminohexanoate oligomer hydrolase: purification and characterization of the nylC gene product.

S Kakudo1, S Negoro, I Urabe, H Okada.   

Abstract

A new type of nylon oligomer degradation enzyme (EIII) was purified from an Escherichia coli clone harboring the EIII gene (nylC). This enzyme hydrolyzed the linear trimer, tetramer, and pentamer of 6-aminohexanoate by an endo-type reaction, and this specificity is different from that of the EI (nylA gene product) and EII (nylB gene product). Amino acid sequencing and sodium dodecyl sulfate-polyacrylamide gel electrophoresis of the purified EIII demonstrated that the enzyme is made of two polypeptide chains arising from an internal cleavage between amino acid residues 266 and 267.

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Year:  1993        PMID: 8285701      PMCID: PMC182563          DOI: 10.1128/aem.59.11.3978-3980.1993

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  12 in total

1.  6-Aminohexanoic acid cyclic dimer hydrolase. A new cyclic amide hydrolase produced by Achromobacter guttatus KI74.

Authors:  S Kinoshita; S Negoro; M Muramatsu; V S Bisaria; S Sawada; H Okada
Journal:  Eur J Biochem       Date:  1977-11-01

2.  Construction of a plasmid vector for the regulatable high level expression of eukaryotic genes in Escherichia coli: an application to overproduction of chicken lysozyme.

Authors:  T Miki; T Yasukochi; H Nagatani; M Furuno; T Orita; H Yamada; T Imoto; T Horiuchi
Journal:  Protein Eng       Date:  1987 Aug-Sep

3.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

4.  Construction of hybrid genes of 6-aminohexanoic acid-oligomer hydrolase and its analogous enzyme. Estimation of the intramolecular regions important for the enzyme evolution.

Authors:  S Negoro; S Nakamura; H Kimura; K Fujiyama; Y Z Zhang; N Kanzaki; H Okada
Journal:  J Biol Chem       Date:  1984-11-25       Impact factor: 5.157

5.  Plasmid control of 6-aminohexanoic acid cyclic dimer degradation enzymes of Flavobacterium sp. KI72.

Authors:  S Negoro; H Shinagawa; A Nakata; S Kinoshita; T Hatozaki; H Okada
Journal:  J Bacteriol       Date:  1980-07       Impact factor: 3.490

6.  Determination of the active-site serine of 6-aminohexanoate-dimer hydrolase.

Authors:  S Negoro; T Mitamura; K Oka; K Kanagawa; H Okada
Journal:  Eur J Biochem       Date:  1989-11-20

7.  High homology between 6-aminohexanoate-cyclic-dimer hydrolases of Flavobacterium and Pseudomonas strains.

Authors:  K Tsuchiya; S Fukuyama; N Kanzaki; K Kanagawa; S Negoro; H Okada
Journal:  J Bacteriol       Date:  1989-06       Impact factor: 3.490

8.  Purification and characterization of 6-aminohexanoic-acid-oligomer hydrolase of Flavobacterium sp. Ki72.

Authors:  S Kinoshita; T Terada; T Taniguchi; Y Takene; S Masuda; N Matsunaga; H Okada
Journal:  Eur J Biochem       Date:  1981-06-01

9.  A new nylon oligomer degradation gene (nylC) on plasmid pOAD2 from a Flavobacterium sp.

Authors:  S Negoro; S Kakudo; I Urabe; H Okada
Journal:  J Bacteriol       Date:  1992-12       Impact factor: 3.490

10.  Plasmid-determined enzymatic degradation of nylon oligomers.

Authors:  S Negoro; T Taniguchi; M Kanaoka; H Kimura; H Okada
Journal:  J Bacteriol       Date:  1983-07       Impact factor: 3.490

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  13 in total

1.  Three-dimensional structure of nylon hydrolase and mechanism of nylon-6 hydrolysis.

Authors:  Seiji Negoro; Naoki Shibata; Yusuke Tanaka; Kengo Yasuhira; Hiroshi Shibata; Haruka Hashimoto; Young-Ho Lee; Shohei Oshima; Ryuji Santa; Shohei Oshima; Kozo Mochiji; Yuji Goto; Takahisa Ikegami; Keisuke Nagai; Dai-Ichiro Kato; Masahiro Takeo; Yoshiki Higuchi
Journal:  J Biol Chem       Date:  2011-12-19       Impact factor: 5.157

2.  Crystallization and X-ray diffraction analysis of 6-aminohexanoate-cyclic-dimer hydrolase from Arthrobacter sp. KI72.

Authors:  Kengo Yasuhira; Yuki Uedo; Naoki Shibata; Seiji Negoro; Masahiro Takeo; Yoshiki Higuchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-11-04

3.  Crystallization and X-ray diffraction analysis of 6-aminohexanoate-dimer hydrolase from Arthrobacter sp. KI72.

Authors:  Taku Ohki; Nobuhiro Mizuno; Naoki Shibata; Masahiro Takeo; Seiji Negoro; Yoshiki Higuchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-09-30

4.  Crystallization and X-ray diffraction analysis of nylon-oligomer hydrolase (NylC) from Agromyces sp. KY5R.

Authors:  Kengo Yasuhira; Naoki Shibata; Yasuhito Tanaka; Naoya Kumagai; Yusuke Tanaka; Keisuke Nagai; Dai-ichiro Kato; Masahiro Takeo; Seiji Negoro; Yoshiki Higuchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-07-19

Review 5.  The nylon oligomer biodegradation system of Flavobacterium and Pseudomonas.

Authors:  S Negoro; K Kato; K Fujiyama; H Okada
Journal:  Biodegradation       Date:  1994-12       Impact factor: 3.909

6.  DOM-fold: a structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding domain.

Authors:  Hua Cheng; Nick V Grishin
Journal:  Protein Sci       Date:  2005-06-03       Impact factor: 6.725

7.  6-Aminohexanoate oligomer hydrolases from the alkalophilic bacteria Agromyces sp. strain KY5R and Kocuria sp. strain KY2.

Authors:  Kengo Yasuhira; Yasuhito Tanaka; Hiroshi Shibata; Yasuyuki Kawashima; Akira Ohara; Dai-ichiro Kato; Masahiro Takeo; Seiji Negoro
Journal:  Appl Environ Microbiol       Date:  2007-09-07       Impact factor: 4.792

8.  Crystallization and X-ray diffraction analysis of nylon hydrolase (NylC) from Arthrobacter sp. KI72.

Authors:  Keisuke Nagai; Kengo Yasuhira; Yusuke Tanaka; Dai-ichiro Kato; Masahiro Takeo; Yoshiki Higuchi; Seiji Negoro; Naoki Shibata
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-28

9.  Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase.

Authors:  Seiji Negoro; Naoki Shibata; Young-Ho Lee; Ikki Takehara; Ryo Kinugasa; Keisuke Nagai; Yusuke Tanaka; Dai-Ichiro Kato; Masahiro Takeo; Yuji Goto; Yoshiki Higuchi
Journal:  Sci Rep       Date:  2018-06-27       Impact factor: 4.379

Review 10.  Plastics: Environmental and Biotechnological Perspectives on Microbial Degradation.

Authors:  Dominik Danso; Jennifer Chow; Wolfgang R Streit
Journal:  Appl Environ Microbiol       Date:  2019-09-17       Impact factor: 4.792

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