Literature DB >> 33582991

Examining Membrane Proteins by Neutron Scattering.

Christine Ebel1, Cécile Breyton2, Anne Martel3.   

Abstract

Small angle neutron scattering (SANS) is a powerful tool for studying the structure of solubilized membrane proteins. It allows describing the general dimension of the membrane protein , evidence conformational changes, and may provide a low-resolution structure at the nm resolution range. This is because SANS can discriminate between the membrane protein and its amphiphilic partner by specific deuteration of the partners and of the buffer. This chapter was written to offer to a scientist aiming to describe a membrane protein structure the basic tools to consider a SANS experiment. It presents the general principle of contrast variation and a bibliographic survey of experimental strategies used for membrane proteins, some basic theoretical background, and a succinct description of the principles of analysis, of the instrumental and sample requirement, and of the practical steps, prior to the experiments, during the experiments and for data analysis.

Keywords:  Contrast variation; Detergent; Membrane proteins; Modelling; Small angle neutron scattering

Mesh:

Substances:

Year:  2020        PMID: 33582991     DOI: 10.1007/978-1-0716-0724-4_7

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  45 in total

Review 1.  Interaction of membrane proteins and lipids with solubilizing detergents.

Authors:  M le Maire; P Champeil; J V Moller
Journal:  Biochim Biophys Acta       Date:  2000-11-23

Review 2.  AUC and Small-Angle Scattering for Membrane Proteins.

Authors:  Aline Le Roy; Kai Wang; Béatrice Schaack; Peter Schuck; Cécile Breyton; Christine Ebel
Journal:  Methods Enzymol       Date:  2015-07-09       Impact factor: 1.600

3.  X-ray and neutron scattering data and their constrained molecular modeling.

Authors:  Stephen J Perkins; Azubuike I Okemefuna; Anira N Fernando; Alexandra Bonner; Hannah E Gilbert; Patricia B Furtado
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

4.  Improved glucose-neopentyl glycol (GNG) amphiphiles for membrane protein solubilization and stabilization.

Authors:  Kyung Ho Cho; Hyoung Eun Bae; Manabendra Das; Samuel H Gellman; Pil Seok Chae
Journal:  Chem Asian J       Date:  2013-11-28

Review 5.  Choosing membrane mimetics for NMR structural studies of transmembrane proteins.

Authors:  Dror E Warschawski; Alexandre A Arnold; Maïwenn Beaugrand; Andrée Gravel; Étienne Chartrand; Isabelle Marcotte
Journal:  Biochim Biophys Acta       Date:  2011-04-06

Review 6.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

Review 7.  Small-angle X-ray scattering on biological macromolecules and nanocomposites in solution.

Authors:  Clement E Blanchet; Dmitri I Svergun
Journal:  Annu Rev Phys Chem       Date:  2012-12-03       Impact factor: 12.703

8.  Detergent-free isolation, characterization, and functional reconstitution of a tetrameric K+ channel: the power of native nanodiscs.

Authors:  Jonas M Dörr; Martijn C Koorengevel; Marre Schäfer; Alexander V Prokofyev; Stefan Scheidelaar; Elwin A W van der Cruijsen; Timothy R Dafforn; Marc Baldus; J Antoinette Killian
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-15       Impact factor: 11.205

9.  Preparing monodisperse macromolecular samples for successful biological small-angle X-ray and neutron-scattering experiments.

Authors:  Cy M Jeffries; Melissa A Graewert; Clément E Blanchet; David B Langley; Andrew E Whitten; Dmitri I Svergun
Journal:  Nat Protoc       Date:  2016-10-06       Impact factor: 13.491

10.  2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.

Authors:  Jill Trewhella; Anthony P Duff; Dominique Durand; Frank Gabel; J Mitchell Guss; Wayne A Hendrickson; Greg L Hura; David A Jacques; Nigel M Kirby; Ann H Kwan; Javier Pérez; Lois Pollack; Timothy M Ryan; Andrej Sali; Dina Schneidman-Duhovny; Torsten Schwede; Dmitri I Svergun; Masaaki Sugiyama; John A Tainer; Patrice Vachette; John Westbrook; Andrew E Whitten
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-08-18       Impact factor: 7.652

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