Literature DB >> 12403625

Solvent interactions of halophilic malate dehydrogenase.

Christine Ebel1, Lionel Costenaro, Mihaela Pascu, Pierre Faou, Blandine Kernel, Flavien Proust-De Martin, Giuseppe Zaccai.   

Abstract

Malate dehydrogenase from the extreme halophilic Haloarcula marismortui (Hm MalDH) is an acidic protein that is unstable below molar salt concentrations. The solvated folded protein was studied by small-angle neutron scattering in solvents containing salt: NaCl, NaCH(3)CO(2), KF, NH(4)Cl, NH(4)CH(3)CO(2), (NH(4))(2)SO(4), MgCl(2), and MgSO(4). It was found that the global solvent interactions depend mainly on the nature of the cation. Complementary mass density measurements in MgCl(2), NaCl, NaCH(3)CO(2), and (NH(4))(2)SO(4) allowed determining the partial molal volumes of the protein, which were found to increase slightly with the salt, and the preferential salt binding parameters for each solvent condition. These are strongly dependent on the cation type and salt concentration. Hm MalDH can be modeled as an invariant particle binding 4100 water molecules in MgCl(2) and 2000 +/- 200 in NaCl, NaCH(3)CO(2), or (NH(4))(2)SO(4). The number of salt molecules associated to the particle decreases from about 85 to 0 in the order MgCl(2) > NaCl = NaCH(3)CO(2) > (NH(4))(2)SO(4). Alternatively, we considered exchangeable sites for water and salt with the effects of solvent nonideality. It does not change the description of the solvent interactions. Solvent anions act on Hm MalDH stability through a limited number of strong binding sites, as those seen at the interfaces of Hm MalDH by crystallography. Cations would act through some strong and numerous weak binding sites defined on the folded protein, in possible addition to nonspecific hydration effects.

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Year:  2002        PMID: 12403625     DOI: 10.1021/bi0258290

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  21 in total

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Review 2.  Small angle neutron scattering for the study of solubilised membrane proteins.

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Journal:  Eur Phys J E Soft Matter       Date:  2013-07-16       Impact factor: 1.890

3.  Structural and Mechanistic Insights into the Improvement of the Halotolerance of a Marine Microbial Esterase by Increasing Intra- and Interdomain Hydrophobic Interactions.

Authors:  Ping-Yi Li; Yi Zhang; Bin-Bin Xie; Yan-Qi Zhang; Jie Hao; Yue Wang; Peng Wang; Chun-Yang Li; Qi-Long Qin; Xi-Ying Zhang; Hai-Nan Su; Mei Shi; Yu-Zhong Zhang; Xiu-Lan Chen
Journal:  Appl Environ Microbiol       Date:  2017-08-31       Impact factor: 4.792

4.  Neutron scattering reveals extremely slow cell water in a Dead Sea organism.

Authors:  Moeava Tehei; Bruno Franzetti; Kathleen Wood; Frank Gabel; Elisa Fabiani; Marion Jasnin; Michaela Zamponi; Dieter Oesterhelt; Giuseppe Zaccai; Margaret Ginzburg; Ben-Zion Ginzburg
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-10       Impact factor: 11.205

5.  Mechanism of salt-induced activity enhancement of a marine-derived laccase, Lac15.

Authors:  Jie Li; Yanan Xie; Rui Wang; Zemin Fang; Wei Fang; Xuecheng Zhang; Yazhong Xiao
Journal:  Eur Biophys J       Date:  2017-09-05       Impact factor: 1.733

6.  Molecular adaptation and salt stress response of Halobacterium salinarum cells revealed by neutron spectroscopy.

Authors:  Pierre Vauclare; Vincent Marty; Elisa Fabiani; Nicolas Martinez; Marion Jasnin; Frank Gabel; Judith Peters; Giuseppe Zaccai; Bruno Franzetti
Journal:  Extremophiles       Date:  2015-09-16       Impact factor: 2.395

7.  Expression, Folding, and Activation of Halophilic Alkaline Phosphatase in Non-Halophilic Brevibacillus choshinensis.

Authors:  Fina Amreta Laksmi; Hikari Imamura; Hirohito Tsurumaru; Yoshitaka Nakamura; Hiroshi Hanagata; Shigeki Arai; Masao Tokunaga; Matsujiro Ishibashi
Journal:  Protein J       Date:  2020-02       Impact factor: 2.371

8.  Salt-dependent studies of NADP-dependent isocitrate dehydrogenase from the halophilic archaeon Haloferax volcanii.

Authors:  Dominique Madern; Mónica Camacho; Adoración Rodríguez-Arnedo; María-José Bonete; Giuseppe Zaccai
Journal:  Extremophiles       Date:  2004-06-18       Impact factor: 2.395

9.  Structural basis for the aminoacid composition of proteins from halophilic archea.

Authors:  Xavier Tadeo; Blanca López-Méndez; Tamara Trigueros; Ana Laín; David Castaño; Oscar Millet
Journal:  PLoS Biol       Date:  2009-12-15       Impact factor: 8.029

10.  Flexibility of the cytoplasmic domain of the phototaxis transducer II from Natronomonas pharaonis.

Authors:  Ivan L Budyak; Olga S Mironova; Naveena Yanamala; Vijayalaxmi Manoharan; Georg Büldt; Ramona Schlesinger; Judith Klein-Seetharaman
Journal:  J Biophys       Date:  2008-10-16
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