Literature DB >> 27153492

Mass Cytometry: Single Cells, Many Features.

Matthew H Spitzer1, Garry P Nolan2.   

Abstract

Technology development in biological research often aims to either increase the number of cellular features that can be surveyed simultaneously or enhance the resolution at which such observations are possible. For decades, flow cytometry has balanced these goals to fill a critical need by enabling the measurement of multiple features in single cells, commonly to examine complex or hierarchical cellular systems. Recently, a format for flow cytometry has been developed that leverages the precision of mass spectrometry. This fusion of the two technologies, termed mass cytometry, provides measurement of over 40 simultaneous cellular parameters at single-cell resolution, significantly augmenting the ability of cytometry to evaluate complex cellular systems and processes. In this Primer, we review the current state of mass cytometry, providing an overview of the instrumentation, its present capabilities, and methods of data analysis, as well as thoughts on future developments and applications.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27153492      PMCID: PMC4860251          DOI: 10.1016/j.cell.2016.04.019

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  53 in total

1.  Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

Authors:  Allon M Klein; Linas Mazutis; Ilke Akartuna; Naren Tallapragada; Adrian Veres; Victor Li; Leonid Peshkin; David A Weitz; Marc W Kirschner
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

2.  Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.

Authors:  Evan Z Macosko; Anindita Basu; Rahul Satija; James Nemesh; Karthik Shekhar; Melissa Goldman; Itay Tirosh; Allison R Bialas; Nolan Kamitaki; Emily M Martersteck; John J Trombetta; David A Weitz; Joshua R Sanes; Alex K Shalek; Aviv Regev; Steven A McCarroll
Journal:  Cell       Date:  2015-05-21       Impact factor: 41.582

3.  Evaluating the efficiency of isotope transmission for improved panel design and a comparison of the detection sensitivities of mass cytometer instruments.

Authors:  Sabine Tricot; Mickael Meyrand; Chiara Sammicheli; Jamila Elhmouzi-Younes; Aurélien Corneau; Sylvie Bertholet; Marie Malissen; Roger Le Grand; Sandra Nuti; Hervé Luche; Antonio Cosma
Journal:  Cytometry A       Date:  2015-02-20       Impact factor: 4.355

4.  Methods for discovery and characterization of cell subsets in high dimensional mass cytometry data.

Authors:  Kirsten E Diggins; P Brent Ferrell; Jonathan M Irish
Journal:  Methods       Date:  2015-05-13       Impact factor: 3.608

5.  Systems biology. Conditional density-based analysis of T cell signaling in single-cell data.

Authors:  Smita Krishnaswamy; Matthew H Spitzer; Michael Mingueneau; Sean C Bendall; Oren Litvin; Erica Stone; Dana Pe'er; Garry P Nolan
Journal:  Science       Date:  2014-10-23       Impact factor: 47.728

6.  Platinum-conjugated antibodies for application in mass cytometry.

Authors:  Henrik E Mei; Michael D Leipold; Holden T Maecker
Journal:  Cytometry A       Date:  2015-09-10       Impact factor: 4.355

7.  Mapping the Diversity of Follicular Helper T Cells in Human Blood and Tonsils Using High-Dimensional Mass Cytometry Analysis.

Authors:  Michael T Wong; Jinmiao Chen; Sriram Narayanan; Wenyu Lin; Rosslyn Anicete; Henry Tan Kun Kiaang; Maria Alicia Curotto De Lafaille; Michael Poidinger; Evan W Newell
Journal:  Cell Rep       Date:  2015-06-11       Impact factor: 9.423

8.  Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis.

Authors:  Jacob H Levine; Erin F Simonds; Sean C Bendall; Kara L Davis; El-ad D Amir; Michelle D Tadmor; Oren Litvin; Harris G Fienberg; Astraea Jager; Eli R Zunder; Rachel Finck; Amanda L Gedman; Ina Radtke; James R Downing; Dana Pe'er; Garry P Nolan
Journal:  Cell       Date:  2015-06-18       Impact factor: 41.582

9.  IMMUNOLOGY. An interactive reference framework for modeling a dynamic immune system.

Authors:  Matthew H Spitzer; Pier Federico Gherardini; Gabriela K Fragiadakis; Nupur Bhattacharya; Robert T Yuan; Andrew N Hotson; Rachel Finck; Yaron Carmi; Eli R Zunder; Wendy J Fantl; Sean C Bendall; Edgar G Engleman; Garry P Nolan
Journal:  Science       Date:  2015-07-10       Impact factor: 47.728

10.  Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm.

Authors:  Eli R Zunder; Rachel Finck; Gregory K Behbehani; El-Ad D Amir; Smita Krishnaswamy; Veronica D Gonzalez; Cynthia G Lorang; Zach Bjornson; Matthew H Spitzer; Bernd Bodenmiller; Wendy J Fantl; Dana Pe'er; Garry P Nolan
Journal:  Nat Protoc       Date:  2015-01-22       Impact factor: 13.491

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  331 in total

Review 1.  Signal Transduction at the Single-Cell Level: Approaches to Study the Dynamic Nature of Signaling Networks.

Authors:  L Naomi Handly; Jason Yao; Roy Wollman
Journal:  J Mol Biol       Date:  2016-07-16       Impact factor: 5.469

Review 2.  New mass spectrometry technologies contributing towards comprehensive and high throughput omics analyses of single cells.

Authors:  Sneha P Couvillion; Ying Zhu; Gabe Nagy; Joshua N Adkins; Charles Ansong; Ryan S Renslow; Paul D Piehowski; Yehia M Ibrahim; Ryan T Kelly; Thomas O Metz
Journal:  Analyst       Date:  2019-01-28       Impact factor: 4.616

Review 3.  Exploring the Fundamental Structures of Life: Non-Targeted, Chemical Analysis of Single Cells and Subcellular Structures.

Authors:  Elizabeth K Neumann; Thanh D Do; Troy J Comi; Jonathan V Sweedler
Journal:  Angew Chem Int Ed Engl       Date:  2019-04-11       Impact factor: 15.336

4.  Mass cytometry deep phenotyping of human mononuclear phagocytes and myeloid-derived suppressor cells from human blood and bone marrow.

Authors:  Mikael Roussel; P Brent Ferrell; Allison R Greenplate; Faustine Lhomme; Simon Le Gallou; Kirsten E Diggins; Douglas B Johnson; Jonathan M Irish
Journal:  J Leukoc Biol       Date:  2017-04-11       Impact factor: 4.962

5.  Systemic Immunologic Consequences of Chronic Periodontitis.

Authors:  D K Gaudilliere; A Culos; K Djebali; A S Tsai; E A Ganio; W M Choi; X Han; A Maghaireh; B Choisy; Q Baca; J F Einhaus; J J Hedou; B Bertrand; K Ando; R Fallahzadeh; M S Ghaemi; R Okada; N Stanley; A Tanada; M Tingle; T Alpagot; J A Helms; M S Angst; N Aghaeepour; B Gaudilliere
Journal:  J Dent Res       Date:  2019-06-21       Impact factor: 6.116

Review 6.  Taking Systems Medicine to Heart.

Authors:  Kalliopi Trachana; Rhishikesh Bargaje; Gustavo Glusman; Nathan D Price; Sui Huang; Leroy E Hood
Journal:  Circ Res       Date:  2018-04-27       Impact factor: 17.367

7.  Identification of gene regulation models from single-cell data.

Authors:  Lisa Weber; William Raymond; Brian Munsky
Journal:  Phys Biol       Date:  2018-05-18       Impact factor: 2.583

8.  High standards for high dimensional investigations.

Authors:  Ruth R Montgomery
Journal:  Cytometry A       Date:  2016-09-23       Impact factor: 4.355

9.  A Chemical Approach for Profiling Intracellular AKT Signaling Dynamics from Single Cells.

Authors:  Shiqun Shao; Zhonghan Li; Hanjun Cheng; Siwen Wang; Nicole G Perkins; Priyanka Sarkar; Wei Wei; Min Xue
Journal:  J Am Chem Soc       Date:  2018-10-12       Impact factor: 15.419

Review 10.  Targeted and Immune-Based Therapies for Hepatocellular Carcinoma.

Authors:  Tim F Greten; Chunwei Walter Lai; Guangfu Li; Kevin F Staveley-O'Carroll
Journal:  Gastroenterology       Date:  2018-10-01       Impact factor: 22.682

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