Literature DB >> 27149219

Facilitating a culture of responsible and effective sharing of cancer genome data.

Lillian L Siu1, Mark Lawler2, David Haussler3, Bartha Maria Knoppers4, Jeremy Lewin1, Daniel J Vis5, Rachel G Liao6, Fabrice Andre7, Ian Banks8, J Carl Barrett9, Carlos Caldas10, Anamaria Aranha Camargo11, Rebecca C Fitzgerald10, Mao Mao12, John E Mattison13, William Pao14, William R Sellers15, Patrick Sullivan16, Bin Tean Teh17, Robyn L Ward18, Jean Claude ZenKlusen19, Charles L Sawyers20, Emile E Voest5.   

Abstract

Rapid and affordable tumor molecular profiling has led to an explosion of clinical and genomic data poised to enhance the diagnosis, prognostication and treatment of cancer. A critical point has now been reached at which the analysis and storage of annotated clinical and genomic information in unconnected silos will stall the advancement of precision cancer care. Information systems must be harmonized to overcome the multiple technical and logistical barriers to data sharing. Against this backdrop, the Global Alliance for Genomic Health (GA4GH) was established in 2013 to create a common framework that enables responsible, voluntary and secure sharing of clinical and genomic data. This Perspective from the GA4GH Clinical Working Group Cancer Task Team highlights the data-aggregation challenges faced by the field, suggests potential collaborative solutions and describes how GA4GH can catalyze a harmonized data-sharing culture.

Entities:  

Mesh:

Year:  2016        PMID: 27149219      PMCID: PMC4995884          DOI: 10.1038/nm.4089

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   53.440


  55 in total

1.  From consent to institutions: designing adaptive governance for genomic biobanks.

Authors:  Kieran C O'Doherty; Michael M Burgess; Kelly Edwards; Richard P Gallagher; Alice K Hawkins; Jane Kaye; Veronica McCaffrey; David E Winickoff
Journal:  Soc Sci Med       Date:  2011-07-02       Impact factor: 4.634

Review 2.  Prioritizing targets for precision cancer medicine.

Authors:  F Andre; E Mardis; M Salm; J-C Soria; L L Siu; C Swanton
Journal:  Ann Oncol       Date:  2014-10-24       Impact factor: 32.976

3.  The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies.

Authors:  Catherine A McCarty; Rex L Chisholm; Christopher G Chute; Iftikhar J Kullo; Gail P Jarvik; Eric B Larson; Rongling Li; Daniel R Masys; Marylyn D Ritchie; Dan M Roden; Jeffery P Struewing; Wendy A Wolf
Journal:  BMC Med Genomics       Date:  2011-01-26       Impact factor: 3.063

Review 4.  Routes for breaching and protecting genetic privacy.

Authors:  Yaniv Erlich; Arvind Narayanan
Journal:  Nat Rev Genet       Date:  2014-05-08       Impact factor: 53.242

5.  Building a rapid learning health care system for oncology: the regulatory framework of CancerLinQ.

Authors:  Richard L Schilsky; Dina L Michels; Amy H Kearbey; Peter Paul Yu; Clifford A Hudis
Journal:  J Clin Oncol       Date:  2014-06-09       Impact factor: 44.544

6.  All the World's a Stage: Facilitating Discovery Science and Improved Cancer Care through the Global Alliance for Genomics and Health.

Authors:  Mark Lawler; Lillian L Siu; Heidi L Rehm; Stephen J Chanock; Gil Alterovitz; John Burn; Fabien Calvo; Denis Lacombe; Bin Tean Teh; Kathryn N North; Charles L Sawyers
Journal:  Cancer Discov       Date:  2015-11       Impact factor: 39.397

7.  International ethics harmonization and the global alliance for genomics and health.

Authors:  Bartha M Knoppers
Journal:  Genome Med       Date:  2014-02-27       Impact factor: 11.117

8.  NCBI's Database of Genotypes and Phenotypes: dbGaP.

Authors:  Kimberly A Tryka; Luning Hao; Anne Sturcke; Yumi Jin; Zhen Y Wang; Lora Ziyabari; Moira Lee; Natalia Popova; Nataliya Sharopova; Masato Kimura; Michael Feolo
Journal:  Nucleic Acids Res       Date:  2013-12-01       Impact factor: 16.971

9.  A human rights approach to an international code of conduct for genomic and clinical data sharing.

Authors:  Bartha M Knoppers; Jennifer R Harris; Isabelle Budin-Ljøsne; Edward S Dove
Journal:  Hum Genet       Date:  2014-02-27       Impact factor: 4.132

10.  Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine.

Authors:  Eliezer M Van Allen; Nikhil Wagle; Petar Stojanov; Danielle L Perrin; Kristian Cibulskis; Sara Marlow; Judit Jane-Valbuena; Dennis C Friedrich; Gregory Kryukov; Scott L Carter; Aaron McKenna; Andrey Sivachenko; Mara Rosenberg; Adam Kiezun; Douglas Voet; Michael Lawrence; Lee T Lichtenstein; Jeff G Gentry; Franklin W Huang; Jennifer Fostel; Deborah Farlow; David Barbie; Leena Gandhi; Eric S Lander; Stacy W Gray; Steven Joffe; Pasi Janne; Judy Garber; Laura MacConaill; Neal Lindeman; Barrett Rollins; Philip Kantoff; Sheila A Fisher; Stacey Gabriel; Gad Getz; Levi A Garraway
Journal:  Nat Med       Date:  2014-05-18       Impact factor: 53.440

View more
  36 in total

Review 1.  Progress Toward Cancer Data Ecosystems.

Authors:  Robert L Grossman
Journal:  Cancer J       Date:  2018 May/Jun       Impact factor: 3.360

Review 2.  Implementing Genome-Driven Oncology.

Authors:  David M Hyman; Barry S Taylor; José Baselga
Journal:  Cell       Date:  2017-02-09       Impact factor: 41.582

3.  Cooperating on Data: The Missing Element in Bringing Real Innovation to Europe's Healthcare Systems.

Authors:  Denis Horgan; Chiara Bernini; Pierre P M Thomas; Servaas A Morre
Journal:  Public Health Genomics       Date:  2019-10-21       Impact factor: 2.000

Review 4.  The NCI Genomic Data Commons as an engine for precision medicine.

Authors:  Mark A Jensen; Vincent Ferretti; Robert L Grossman; Louis M Staudt
Journal:  Blood       Date:  2017-06-09       Impact factor: 22.113

Review 5.  Delivering precision oncology to patients with cancer.

Authors:  Joaquin Mateo; Lotte Steuten; Philippe Aftimos; Fabrice André; Mark Davies; Elena Garralda; Jan Geissler; Don Husereau; Iciar Martinez-Lopez; Nicola Normanno; Jorge S Reis-Filho; Stephen Stefani; David M Thomas; C Benedikt Westphalen; Emile Voest
Journal:  Nat Med       Date:  2022-04-19       Impact factor: 87.241

6.  Practical considerations for implementing genomic information resources. Experiences from eMERGE and CSER.

Authors:  Luke V Rasmussen; Casey L Overby; John Connolly; Christopher G Chute; Joshua C Denny; Robert Freimuth; Andrea L Hartzler; Ingrid A Holm; Shannon Manzi; Jyotishman Pathak; Peggy L Peissig; Maureen Smith; Marc S Williams; Brian H Shirts; Elena M Stoffel; Peter Tarczy-Hornoch; Carolyn R Rohrer Vitek; Wendy A Wolf; Justin Starren
Journal:  Appl Clin Inform       Date:  2016-09-21       Impact factor: 2.342

7.  AACR Project GENIE: Powering Precision Medicine through an International Consortium.

Authors: 
Journal:  Cancer Discov       Date:  2017-06-01       Impact factor: 39.397

8.  A cloud-based workflow to quantify transcript-expression levels in public cancer compendia.

Authors:  P J Tatlow; Stephen R Piccolo
Journal:  Sci Rep       Date:  2016-12-16       Impact factor: 4.379

Review 9.  Critical research gaps and recommendations to inform research prioritisation for more effective prevention and improved outcomes in colorectal cancer.

Authors:  Mark Lawler; Deborah Alsina; Richard A Adams; Annie S Anderson; Gina Brown; Nicola S Fearnhead; Stephen W Fenwick; Stephen P Halloran; Daniel Hochhauser; Mark A Hull; Viktor H Koelzer; Angus G K McNair; Kevin J Monahan; Inke Näthke; Christine Norton; Marco R Novelli; Robert J C Steele; Anne L Thomas; Lisa M Wilde; Richard H Wilson; Ian Tomlinson
Journal:  Gut       Date:  2018-01       Impact factor: 23.059

10.  Personalized Medicine in the Oncology Clinic: Implementation and Outcomes of the Johns Hopkins Molecular Tumor Board.

Authors:  W Brian Dalton; Patrick M Forde; Hyunseok Kang; Roisin M Connolly; Vered Stearns; Christopher D Gocke; James R Eshleman; Jennifer Axilbund; Dana Petry; Cindy Geoghegan; Antonio C Wolff; David M Loeb; Christine A Pratilas; Christian F Meyer; Eric S Christenson; Shannon A Slater; Jennifer Ensminger; Heather A Parsons; Ben H Park; Josh Lauring
Journal:  JCO Precis Oncol       Date:  2017-05-31
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.