Literature DB >> 27136078

DNA-guided genome editing using the Natronobacterium gregoryi Argonaute.

Feng Gao1, Xiao Z Shen2, Feng Jiang1, Yongqiang Wu1, Chunyu Han1.   

Abstract

The RNA-guided endonuclease Cas9 has made genome editing a widely accessible technique. Similar to Cas9, endonucleases from the Argonaute protein family also use oligonucleotides as guides to degrade invasive genomes. Here we report that the Natronobacterium gregoryi Argonaute (NgAgo) is a DNA-guided endonuclease suitable for genome editing in human cells. NgAgo binds 5' phosphorylated single-stranded guide DNA (gDNA) of ∼24 nucleotides, efficiently creates site-specific DNA double-strand breaks when loaded with the gDNA. The NgAgo-gDNA system does not require a protospacer-adjacent motif (PAM), as does Cas9, and preliminary characterization suggests a low tolerance to guide-target mismatches and high efficiency in editing (G+C)-rich genomic targets.

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Year:  2016        PMID: 27136078     DOI: 10.1038/nbt.3547

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  22 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease.

Authors:  Seung Woo Cho; Sojung Kim; Jong Min Kim; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

3.  Biochemistry. A bacterial seek-and-destroy system for foreign DNA.

Authors:  Jörg Vogel
Journal:  Science       Date:  2014-05-30       Impact factor: 47.728

4.  Genome engineering using the CRISPR-Cas9 system.

Authors:  F Ann Ran; Patrick D Hsu; Jason Wright; Vineeta Agarwala; David A Scott; Feng Zhang
Journal:  Nat Protoc       Date:  2013-10-24       Impact factor: 13.491

5.  Structural basis for microRNA targeting.

Authors:  Nicole T Schirle; Jessica Sheu-Gruttadauria; Ian J MacRae
Journal:  Science       Date:  2014-10-31       Impact factor: 47.728

6.  DNA-guided DNA interference by a prokaryotic Argonaute.

Authors:  Daan C Swarts; Matthijs M Jore; Edze R Westra; Yifan Zhu; Jorijn H Janssen; Ambrosius P Snijders; Yanli Wang; Dinshaw J Patel; José Berenguer; Stan J J Brouns; John van der Oost
Journal:  Nature       Date:  2014-02-16       Impact factor: 49.962

7.  The structure of human argonaute-2 in complex with miR-20a.

Authors:  Elad Elkayam; Claus-D Kuhn; Ante Tocilj; Astrid D Haase; Emily M Greene; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Cell       Date:  2012-06-07       Impact factor: 41.582

8.  Single-Molecule Imaging Reveals that Argonaute Reshapes the Binding Properties of Its Nucleic Acid Guides.

Authors:  William E Salomon; Samson M Jolly; Melissa J Moore; Phillip D Zamore; Victor Serebrov
Journal:  Cell       Date:  2015-07-02       Impact factor: 41.582

9.  Mammalian Argonaute-DNA binding?

Authors:  Neil R Smalheiser; Octavio L A Gomes
Journal:  Biol Direct       Date:  2014-12-04       Impact factor: 4.540

10.  RNA-programmed genome editing in human cells.

Authors:  Martin Jinek; Alexandra East; Aaron Cheng; Steven Lin; Enbo Ma; Jennifer Doudna
Journal:  Elife       Date:  2013-01-29       Impact factor: 8.140

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  70 in total

Review 1.  Genome editing revolutionize the creation of genetically modified pigs for modeling human diseases.

Authors:  Jing Yao; Jiaojiao Huang; Jianguo Zhao
Journal:  Hum Genet       Date:  2016-07-18       Impact factor: 4.132

Review 2.  The present and future of genome editing in cancer research.

Authors:  Xiaoyi Li; Raymond Wu; Andrea Ventura
Journal:  Hum Genet       Date:  2016-07-18       Impact factor: 4.132

Review 3.  Genome editing: a robust technology for human stem cells.

Authors:  Arun Pandian Chandrasekaran; Minjung Song; Suresh Ramakrishna
Journal:  Cell Mol Life Sci       Date:  2017-04-12       Impact factor: 9.261

Review 4.  Precise, flexible and affordable gene stacking for crop improvement.

Authors:  Weiqiang Chen; David W Ow
Journal:  Bioengineered       Date:  2017-01-10       Impact factor: 3.269

Review 5.  Prokaryotic Argonaute proteins: novel genome-editing tools?

Authors:  Jorrit W Hegge; Daan C Swarts; John van der Oost
Journal:  Nat Rev Microbiol       Date:  2017-07-24       Impact factor: 60.633

6.  Addendum: Editorial Expression of Concern: DNA-guided genome editing using the Natronobacterium gregoryi Argonaute.

Authors:  Feng Gao; Xiao Z Shen; Feng Jiang; Yongqiang Wu; Chunyu Han
Journal:  Nat Biotechnol       Date:  2017-05-09       Impact factor: 54.908

7.  Updated: NgAgo gene-editing controversy escalates in peer-reviewed papers.

Authors:  David Cyranoski
Journal:  Nature       Date:  2016-11-23       Impact factor: 49.962

8.  Orphan drug development in China - Turning challenges into opportunities.

Authors:  Xiaowei Jin; Li Chen
Journal:  Intractable Rare Dis Res       Date:  2016-11

Review 9.  To CRISPR and beyond: the evolution of genome editing in stem cells.

Authors:  Kuang-Yui Chen; Paul S Knoepfler
Journal:  Regen Med       Date:  2016-12-01       Impact factor: 3.806

10.  Effects of HPV Pseudotype Virus in Cutting E6 Gene Selectively in SiHa Cells.

Authors:  Yan-Xiang Cheng; Gan-Tao Chen; Xiao Yang; Yan-Qing Wang; Li Hong
Journal:  Curr Med Sci       Date:  2018-04-30
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