Literature DB >> 22682761

The structure of human argonaute-2 in complex with miR-20a.

Elad Elkayam1, Claus-D Kuhn, Ante Tocilj, Astrid D Haase, Emily M Greene, Gregory J Hannon, Leemor Joshua-Tor.   

Abstract

Argonaute proteins lie at the heart of the RNA-induced silencing complex (RISC), wherein they use small RNA guides to recognize targets. Initial insight into the architecture of Argonautes came from studies of prokaryotic proteins, revealing a crescent-shaped base made up of the amino-terminal, PAZ, middle, and PIWI domains. The recently reported crystal structure of human Argonaute-2 (hAgo2), the "slicer" in RNA interference, in complex with a mixed population of RNAs derived from insect cells provides insight into the architecture of a eukaryotic Argonaute protein with defined biochemical and biological functions. Here, we report the structure of human Ago2 bound to a physiologically relevant microRNA, microRNA-20a, at 2.2 Å resolution. The miRNA is anchored at both ends by the Mid and PAZ domains and makes several kinks and turns along the binding groove. Interestingly, miRNA binding confers remarkable stability on hAgo2, locking this otherwise flexible enzyme into a stable conformation.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22682761      PMCID: PMC3464090          DOI: 10.1016/j.cell.2012.05.017

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  40 in total

1.  Argonaute2, a link between genetic and biochemical analyses of RNAi.

Authors:  S M Hammond; S Boettcher; A A Caudy; R Kobayashi; G J Hannon
Journal:  Science       Date:  2001-08-10       Impact factor: 47.728

2.  The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes.

Authors:  Ji-Joon Song; Jidong Liu; Niraj H Tolia; Jonathan Schneiderman; Stephanie K Smith; Robert A Martienssen; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Nat Struct Biol       Date:  2003-11-16

3.  Crystal structure of Argonaute and its implications for RISC slicer activity.

Authors:  Ji-Joon Song; Stephanie K Smith; Gregory J Hannon; Leemor Joshua-Tor
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

4.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

5.  The N domain of Argonaute drives duplex unwinding during RISC assembly.

Authors:  Pieter Bas Kwak; Yukihide Tomari
Journal:  Nat Struct Mol Biol       Date:  2012-01-10       Impact factor: 15.369

6.  [20] Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Zbyszek Otwinowski; Wladek Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

7.  Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein.

Authors:  Jin-Biao Ma; Yu-Ren Yuan; Gunter Meister; Yi Pei; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

8.  RISC is a 5' phosphomonoester-producing RNA endonuclease.

Authors:  Javier Martinez; Thomas Tuschl
Journal:  Genes Dev       Date:  2004-04-22       Impact factor: 11.361

9.  Structure of the guide-strand-containing argonaute silencing complex.

Authors:  Yanli Wang; Gang Sheng; Stefan Juranek; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2008-08-27       Impact factor: 49.962

10.  Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.

Authors:  Yanli Wang; Stefan Juranek; Haitao Li; Gang Sheng; Greg S Wardle; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2009-10-08       Impact factor: 49.962

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  250 in total

1.  Evolution of structural and functional diversification among plant Argonautes.

Authors:  Ravi K Singh; Shree P Pandey
Journal:  Plant Signal Behav       Date:  2015

Review 2.  RNAi in Plants: An Argonaute-Centered View.

Authors:  Xiaofeng Fang; Yijun Qi
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

Review 3.  Diversifying microRNA sequence and function.

Authors:  Stefan L Ameres; Phillip D Zamore
Journal:  Nat Rev Mol Cell Biol       Date:  2013-06-26       Impact factor: 94.444

4.  Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage.

Authors:  Gang Sheng; Hongtu Zhao; Jiuyu Wang; Yu Rao; Wenwen Tian; Daan C Swarts; John van der Oost; Dinshaw J Patel; Yanli Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-27       Impact factor: 11.205

Review 5.  Demystifying the nuclear function of Argonaute proteins.

Authors:  Vera Huang; Long-Cheng Li
Journal:  RNA Biol       Date:  2014-01-02       Impact factor: 4.652

6.  Wolbachia interferes with the intracellular distribution of Argonaute 1 in the dengue vector Aedes aegypti by manipulating the host microRNAs.

Authors:  Mazhar Hussain; Scott L O'Neill; Sassan Asgari
Journal:  RNA Biol       Date:  2013-12-10       Impact factor: 4.652

Review 7.  PIWI-interacting RNAs: from generation to transgenerational epigenetics.

Authors:  Maartje J Luteijn; René F Ketting
Journal:  Nat Rev Genet       Date:  2013-06-25       Impact factor: 53.242

Review 8.  Argonaute proteins: functional insights and emerging roles.

Authors:  Gunter Meister
Journal:  Nat Rev Genet       Date:  2013-06-04       Impact factor: 53.242

9.  Base-pair conformational switch modulates miR-34a targeting of Sirt1 mRNA.

Authors:  Ileana Guzzetti; Parisa Ebrahimi; Sarah Friebe Sandoz; Emilie Steiner; Lorenzo Baronti; Judith Schlagnitweit; Bastian Fromm; Luis Silva; Carolina Fontana; Alan A Chen; Katja Petzold
Journal:  Nature       Date:  2020-05-27       Impact factor: 49.962

10.  Multiple sensors ensure guide strand selection in human RNAi pathways.

Authors:  Cameron L Noland; Jennifer A Doudna
Journal:  RNA       Date:  2013-03-26       Impact factor: 4.942

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