Literature DB >> 27126047

Broken detailed balance at mesoscopic scales in active biological systems.

Christopher Battle1, Chase P Broedersz2, Nikta Fakhri3, Veikko F Geyer4, Jonathon Howard4, Christoph F Schmidt5, Fred C MacKintosh6.   

Abstract

Systems in thermodynamic equilibrium are not only characterized by time-independent macroscopic properties, but also satisfy the principle of detailed balance in the transitions between microscopic configurations. Living systems function out of equilibrium and are characterized by directed fluxes through chemical states, which violate detailed balance at the molecular scale. Here we introduce a method to probe for broken detailed balance and demonstrate how such nonequilibrium dynamics are manifest at the mesosopic scale. The periodic beating of an isolated flagellum from Chlamydomonas reinhardtii exhibits probability flux in the phase space of shapes. With a model, we show how the breaking of detailed balance can also be quantified in stationary, nonequilibrium stochastic systems in the absence of periodic motion. We further demonstrate such broken detailed balance in the nonperiodic fluctuations of primary cilia of epithelial cells. Our analysis provides a general tool to identify nonequilibrium dynamics in cells and tissues.
Copyright © 2016, American Association for the Advancement of Science.

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Year:  2016        PMID: 27126047      PMCID: PMC8164727          DOI: 10.1126/science.aac8167

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  25 in total

1.  Equilibrium regained: from nonequilibrium chaos to statistical mechanics.

Authors:  D A Egolf
Journal:  Science       Date:  2000-01-07       Impact factor: 47.728

2.  Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality.

Authors:  Jan Liphardt; Sophie Dumont; Steven B Smith; Ignacio Tinoco; Carlos Bustamante
Journal:  Science       Date:  2002-06-07       Impact factor: 47.728

3.  Ciliated secretory cells in the pars distalis of the mouse hypophysis.

Authors:  B G BARNES
Journal:  J Ultrastruct Res       Date:  1961-10

4.  Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci.

Authors:  Stephanie C Weber; Andrew J Spakowitz; Julie A Theriot
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-19       Impact factor: 11.205

5.  How molecular motors shape the flagellar beat.

Authors:  Ingmar H Riedel-Kruse; Andreas Hilfinger; Jonathon Howard; Frank Jülicher
Journal:  HFSP J       Date:  2007-09

Review 6.  Basal bodies platforms for building cilia.

Authors:  Wallace F Marshall
Journal:  Curr Top Dev Biol       Date:  2008       Impact factor: 4.897

Review 7.  Cytoplasmic diffusion: molecular motors mix it up.

Authors:  Clifford P Brangwynne; Gijsje H Koenderink; Frederick C MacKintosh; David A Weitz
Journal:  J Cell Biol       Date:  2008-11-10       Impact factor: 10.539

8.  Physics of chemoreception.

Authors:  H C Berg; E M Purcell
Journal:  Biophys J       Date:  1977-11       Impact factor: 4.033

Review 9.  Diffusive transport without detailed balance in motile bacteria: does microbiology need statistical physics?

Authors:  M E Cates
Journal:  Rep Prog Phys       Date:  2012-03-09

Review 10.  The primary cilium as the cell's antenna: signaling at a sensory organelle.

Authors:  Veena Singla; Jeremy F Reiter
Journal:  Science       Date:  2006-08-04       Impact factor: 47.728

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  45 in total

Review 1.  From isolated structures to continuous networks: A categorization of cytoskeleton-based motile engineered biological microstructures.

Authors:  Rachel Andorfer; Joshua D Alper
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2019-02-11

2.  Core Concept: How nonequilibrium thermodynamics speaks to the mystery of life.

Authors:  Stephen Ornes
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

3.  Negative reciprocity, not ordered assembly, underlies the interaction of Sox2 and Oct4 on DNA.

Authors:  John W Biddle; Maximilian Nguyen; Jeremy Gunawardena
Journal:  Elife       Date:  2019-02-14       Impact factor: 8.140

4.  Flagellar kinematics reveals the role of environment in shaping sperm motility.

Authors:  Jeffrey S Guasto; Jonathan B Estrada; Filippo Menolascina; Lisa J Burton; Mohak Patel; Christian Franck; A E Hosoi; Richard K Zimmer; Roman Stocker
Journal:  J R Soc Interface       Date:  2020-09-09       Impact factor: 4.118

5.  Energy dissipation and fluctuations in a driven liquid.

Authors:  Clara Del Junco; Laura Tociu; Suriyanarayanan Vaikuntanathan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-16       Impact factor: 11.205

Review 6.  Mechanical Properties of the Cytoskeleton and Cells.

Authors:  Adrian F Pegoraro; Paul Janmey; David A Weitz
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-11-01       Impact factor: 10.005

7.  Fluctuation spectra and force generation in nonequilibrium systems.

Authors:  Alpha A Lee; Dominic Vella; John S Wettlaufer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-15       Impact factor: 11.205

8.  Motile cilia hydrodynamics: entrainment versus synchronization when coupling through flow.

Authors:  Evelyn Hamilton; Nicola Pellicciotta; Luigi Feriani; Pietro Cicuta
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-12-30       Impact factor: 6.237

9.  A thermodynamically consistent model of the post-translational Kai circadian clock.

Authors:  Joris Paijmans; David K Lubensky; Pieter Rein Ten Wolde
Journal:  PLoS Comput Biol       Date:  2017-03-15       Impact factor: 4.475

Review 10.  Non-equilibrium assembly of microtubules: from molecules to autonomous chemical robots.

Authors:  H Hess; Jennifer L Ross
Journal:  Chem Soc Rev       Date:  2017-09-18       Impact factor: 54.564

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