Literature DB >> 12052949

Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality.

Jan Liphardt1, Sophie Dumont, Steven B Smith, Ignacio Tinoco, Carlos Bustamante.   

Abstract

Recent advances in statistical mechanical theory can be used to solve a fundamental problem in experimental thermodynamics. In 1997, Jarzynski proved an equality relating the irreversible work to the equilibrium free energy difference, DeltaG. This remarkable theoretical result states that it is possible to obtain equilibrium thermodynamic parameters from processes carried out arbitrarily far from equilibrium. We test Jarzynski's equality by mechanically stretching a single molecule of RNA reversibly and irreversibly between two conformations. Application of this equality to the irreversible work trajectories recovers the DeltaG profile of the stretching process to within k(B)T/2 (half the thermal energy) of its best independent estimate, the mean work of reversible stretching. The implementation and test of Jarzynski's equality provides the first example of its use as a bridge between the statistical mechanics of equilibrium and nonequilibrium systems. This work also extends the thermodynamic analysis of single molecule manipulation data beyond the context of equilibrium experiments.

Mesh:

Substances:

Year:  2002        PMID: 12052949     DOI: 10.1126/science.1071152

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  139 in total

1.  Mechanically probing the folding pathway of single RNA molecules.

Authors:  Ulrich Gerland; Ralf Bundschuh; Terence Hwa
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

2.  A two-state kinetic model for the unfolding of single molecules by mechanical force.

Authors:  F Ritort; C Bustamante; I Tinoco
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-08       Impact factor: 11.205

3.  Developing an energy landscape for the novel function of a (beta/alpha)8 barrel: ammonia conduction through HisF.

Authors:  Rommie Amaro; Emad Tajkhorshid; Zaida Luthey-Schulten
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-10       Impact factor: 11.205

4.  Optimality and thermodynamics determine the evolution of transcriptional regulatory networks.

Authors:  Marco Avila-Elchiver; Deepak Nagrath; Martin L Yarmush
Journal:  Mol Biosyst       Date:  2011-11-10

5.  Using nonequilibrium measurements to determine macromolecule free-energy differences.

Authors:  Ronald F Fox
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-20       Impact factor: 11.205

6.  Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements.

Authors:  Jeff Gore; Felix Ritort; Carlos Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-03       Impact factor: 11.205

7.  Can energy landscape roughness of proteins and RNA be measured by using mechanical unfolding experiments?

Authors:  Changbong Hyeon; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-21       Impact factor: 11.205

8.  Single-molecule investigations of RNA dissociation.

Authors:  Nicola H Green; Philip M Williams; Omar Wahab; Martyn C Davies; Clive J Roberts; Saul J B Tendler; Stephanie Allen
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

Review 9.  Force as a useful variable in reactions: unfolding RNA.

Authors:  Ignacio Tinoco
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

10.  The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques.

Authors:  Michael Schlierf; Hongbin Li; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.