Literature DB >> 28096502

Core Concept: How nonequilibrium thermodynamics speaks to the mystery of life.

Stephen Ornes.   

Abstract

Mesh：

Year:  2017        PMID： 28096502      PMCID： PMC5255588          DOI： 10.1073/pnas.1620001114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  7 in total

Review 1.  Cytoplasmic diffusion: molecular motors mix it up.

Authors:  Clifford P Brangwynne; Gijsje H Koenderink; Frederick C MacKintosh; David A Weitz
Journal:  J Cell Biol       Date:  2008-11-10       Impact factor: 10.539

2.  Nonequilibrium microtubule fluctuations in a model cytoskeleton.

Authors:  Clifford P Brangwynne; Gijsje H Koenderink; Frederick C Mackintosh; David A Weitz
Journal:  Phys Rev Lett       Date:  2008-03-21       Impact factor: 9.161

3.  Equilibrium microstates which generate second law violating steady states.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1994-08

4.  High-resolution mapping of intracellular fluctuations using carbon nanotubes.

Authors:  Nikta Fakhri; Alok D Wessel; Charlotte Willms; Matteo Pasquali; Dieter R Klopfenstein; Frederick C MacKintosh; Christoph F Schmidt
Journal:  Science       Date:  2014-05-30       Impact factor: 47.728

5.  Broken detailed balance at mesoscopic scales in active biological systems.

Authors:  Christopher Battle; Chase P Broedersz; Nikta Fakhri; Veikko F Geyer; Jonathon Howard; Christoph F Schmidt; Fred C MacKintosh
Journal:  Science       Date:  2016-04-29       Impact factor: 47.728

6.  Keeping up with the 'omics: non-equilibrium models of gene regulation.

Authors:  David Pincus
Journal:  BMC Biol       Date:  2015-02-10       Impact factor: 7.431

7.  A framework for modelling gene regulation which accommodates non-equilibrium mechanisms.

Authors:  Tobias Ahsendorf; Felix Wong; Roland Eils; Jeremy Gunawardena
Journal:  BMC Biol       Date:  2014-12-05       Impact factor: 7.431
  7 in total
  12 in total

1.  Negative reciprocity, not ordered assembly, underlies the interaction of Sox2 and Oct4 on DNA.

Authors:  John W Biddle; Maximilian Nguyen; Jeremy Gunawardena
Journal:  Elife       Date:  2019-02-14       Impact factor: 8.140

Review 2.  Self-organization across scales: from molecules to organisms.

Authors:  Tanumoy Saha; Milos Galic
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-05-26       Impact factor: 6.237

3.  Cellular packing, mechanical stress and the evolution of multicellularity.

Authors:  Shane Jacobeen; Jennifer T Pentz; Elyes C Graba; Colin G Brandys; William C Ratcliff; Peter J Yunker
Journal:  Nat Phys       Date:  2018-03       Impact factor: 20.034

4.  Metabolomics as an Emerging Tool in the Search for Astrobiologically Relevant Biomarkers.

Authors:  Lauren Seyler; Elizabeth B Kujawinski; Armando Azua-Bustos; Michael D Lee; Jeffrey Marlow; Scott M Perl; Henderson James Cleaves Ii
Journal:  Astrobiology       Date:  2020-06-17       Impact factor: 4.335

5.  Change in inorganic phosphate physical state can regulate transcription.

Authors:  Max E Gottesman; Arkady Mustaev
Journal:  Transcription       Date:  2019-10-31

6.  Spontaneous Reorganization of DNA-Based Polymers in Higher Ordered Structures Fueled by RNA.

Authors:  Serena Gentile; Erica Del Grosso; Passa E Pungchai; Elisa Franco; Leonard J Prins; Francesco Ricci
Journal:  J Am Chem Soc       Date:  2021-11-29       Impact factor: 15.419

Review 7.  Designing bioresponsive nanomaterials for intracellular self-assembly.

Authors:  Sarah Chagri; David Y W Ng; Tanja Weil
Journal:  Nat Rev Chem       Date:  2022-04-01       Impact factor: 34.571

8.  Spatial covariance analysis reveals the residue-by-residue thermodynamic contribution of variation to the CFTR fold.

Authors:  Frédéric Anglès; Chao Wang; William E Balch
Journal:  Commun Biol       Date:  2022-04-13

9.  Water content, adenylate kinase, and mitochondria drive adenylate balance in dehydrating and imbibing seeds.

Authors:  Marie-Paule Raveneau; Abdelilah Benamar; David Macherel
Journal:  J Exp Bot       Date:  2017-06-15       Impact factor: 6.992

10.  Chiral Interface of Amyloid Beta (Aβ): Relevance to Protein Aging, Aggregation and Neurodegeneration.

Authors:  Victor V Dyakin; Thomas M Wisniewski; Abel Lajtha
Journal:  Symmetry (Basel)       Date:  2020-04-07       Impact factor: 2.713
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