Literature DB >> 22517744

Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci.

Stephanie C Weber1, Andrew J Spakowitz, Julie A Theriot.   

Abstract

Chromosomal loci jiggle in place between segregation events in prokaryotic cells and during interphase in eukaryotic nuclei. This motion seems random and is often attributed to brownian motion. However, we show here that locus dynamics in live bacteria and yeast are sensitive to metabolic activity. When ATP synthesis is inhibited, the apparent diffusion coefficient decreases, whereas the subdiffusive scaling exponent remains constant. Furthermore, the magnitude of locus motion increases more steeply with temperature in untreated cells than in ATP-depleted cells. This "superthermal" response suggests that untreated cells have an additional source of molecular agitation, beyond thermal motion, that increases sharply with temperature. Such ATP-dependent fluctuations are likely mechanical, because the heat dissipated from metabolic processes is insufficient to account for the difference in locus motion between untreated and ATP-depleted cells. Our data indicate that ATP-dependent enzymatic activity, in addition to thermal fluctuations, contributes to the molecular agitation driving random (sub)diffusive motion in the living cell.

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Year:  2012        PMID: 22517744      PMCID: PMC3358901          DOI: 10.1073/pnas.1119505109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

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7.  Viscosity of cellular protoplasm.

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  93 in total

1.  Active diffusion: the erratic dance of chromosomal loci.

Authors:  Fred C MacKintosh
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-04       Impact factor: 11.205

2.  Micron-scale coherence in interphase chromatin dynamics.

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Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

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Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-06-29

5.  Phage DNA dynamics in cells with different fates.

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Journal:  Biophys J       Date:  2015-04-21       Impact factor: 4.033

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7.  Diffusion within the cytoplasm: a mesoscale model of interacting macromolecules.

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8.  Hydrodynamic collective effects of active protein machines in solution and lipid bilayers.

Authors:  Alexander S Mikhailov; Raymond Kapral
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

Review 9.  Nuclear bodies: the emerging biophysics of nucleoplasmic phases.

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Journal:  Curr Opin Cell Biol       Date:  2015-05-15       Impact factor: 8.382

10.  Nanoscale histone localization in live cells reveals reduced chromatin mobility in response to DNA damage.

Authors:  Jing Liu; Pierre-Alexandre Vidi; Sophie A Lelièvre; Joseph M K Irudayaraj
Journal:  J Cell Sci       Date:  2014-12-12       Impact factor: 5.285

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