Literature DB >> 33986261

Cellular connectomes as arbiters of local circuit models in the cerebral cortex.

Emmanuel Klinger1,2,3, Alessandro Motta1, Carsten Marr2, Fabian J Theis4,5, Moritz Helmstaedter6.   

Abstract

With the availability of cellular-resolution connectivity maps, connectomes, from the mammalian nervous system, it is in question how informative such massive connectomic data can be for the distinction of local circuit models in the mammalian cerebral cortex. Here, we investigated whether cellular-resolution connectomic data can in principle allow model discrimination for local circuit modules in layer 4 of mouse primary somatosensory cortex. We used approximate Bayesian model selection based on a set of simple connectome statistics to compute the posterior probability over proposed models given a to-be-measured connectome. We find that the distinction of the investigated local cortical models is faithfully possible based on purely structural connectomic data with an accuracy of more than 90%, and that such distinction is stable against substantial errors in the connectome measurement. Furthermore, mapping a fraction of only 10% of the local connectome is sufficient for connectome-based model distinction under realistic experimental constraints. Together, these results show for a concrete local circuit example that connectomic data allows model selection in the cerebral cortex and define the experimental strategy for obtaining such connectomic data.

Entities:  

Year:  2021        PMID: 33986261      PMCID: PMC8119988          DOI: 10.1038/s41467-021-22856-z

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  78 in total

1.  Feedforward mechanisms of excitatory and inhibitory cortical receptive fields.

Authors:  Randy M Bruno; Daniel J Simons
Journal:  J Neurosci       Date:  2002-12-15       Impact factor: 6.167

Review 2.  Closed-loop neuronal computations: focus on vibrissa somatosensation in rat.

Authors:  Ehud Ahissar; David Kleinfeld
Journal:  Cereb Cortex       Date:  2003-01       Impact factor: 5.357

3.  Harnessing nonlinearity: predicting chaotic systems and saving energy in wireless communication.

Authors:  Herbert Jaeger; Harald Haas
Journal:  Science       Date:  2004-04-02       Impact factor: 47.728

4.  The excitatory neuronal network of the C2 barrel column in mouse primary somatosensory cortex.

Authors:  Sandrine Lefort; Christian Tomm; J-C Floyd Sarria; Carl C H Petersen
Journal:  Neuron       Date:  2009-01-29       Impact factor: 17.173

Review 5.  3D structural imaging of the brain with photons and electrons.

Authors:  Moritz Helmstaedter; Kevin L Briggman; Winfried Denk
Journal:  Curr Opin Neurobiol       Date:  2009-04-09       Impact factor: 6.627

6.  webKnossos: efficient online 3D data annotation for connectomics.

Authors:  Kevin M Boergens; Manuel Berning; Tom Bocklisch; Dominic Bräunlein; Florian Drawitsch; Johannes Frohnhofen; Tom Herold; Philipp Otto; Norman Rzepka; Thomas Werkmeister; Daniel Werner; Georg Wiese; Heiko Wissler; Moritz Helmstaedter
Journal:  Nat Methods       Date:  2017-06-12       Impact factor: 28.547

7.  Learning context cues for synapse segmentation in EM volumes.

Authors:  Carlos Becker; Karim Ali; Graham Knott; Pascal Fua
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

8.  Simulation-based model selection for dynamical systems in systems and population biology.

Authors:  Tina Toni; Michael P H Stumpf
Journal:  Bioinformatics       Date:  2009-10-29       Impact factor: 6.937

9.  The development of cryo-EM into a mainstream structural biology technique.

Authors:  Eva Nogales
Journal:  Nat Methods       Date:  2016-01       Impact factor: 28.547

10.  Automated detection of synapses in serial section transmission electron microscopy image stacks.

Authors:  Anna Kreshuk; Ullrich Koethe; Elizabeth Pax; Davi D Bock; Fred A Hamprecht
Journal:  PLoS One       Date:  2014-02-06       Impact factor: 3.240

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  3 in total

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Authors:  Yuxin Zhang; Tobias Ackels; Alexandra Pacureanu; Marie-Christine Zdora; Anne Bonnin; Andreas T Schaefer; Carles Bosch
Journal:  Front Cell Dev Biol       Date:  2022-06-08

2.  Functional and multiscale 3D structural investigation of brain tissue through correlative in vivo physiology, synchrotron microtomography and volume electron microscopy.

Authors:  Carles Bosch; Tobias Ackels; Alexandra Pacureanu; Yuxin Zhang; Christopher J Peddie; Manuel Berning; Norman Rzepka; Marie-Christine Zdora; Isabell Whiteley; Malte Storm; Anne Bonnin; Christoph Rau; Troy Margrie; Lucy Collinson; Andreas T Schaefer
Journal:  Nat Commun       Date:  2022-05-25       Impact factor: 17.694

3.  Local Connections of Pyramidal Neurons to Parvalbumin-Producing Interneurons in Motor-Associated Cortical Areas of Mice.

Authors:  Eriko Kuramoto; Yasuhiro R Tanaka; Hiroyuki Hioki; Tetsuya Goto; Takeshi Kaneko
Journal:  eNeuro       Date:  2022-02-02
  3 in total

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