Literature DB >> 27690365

Mesoscale imaging with cryo-light and X-rays: Larger than molecular machines, smaller than a cell.

Axel A Ekman1, Jian-Hua Chen1, Jessica Guo1, Gerry McDermott1, Mark A Le Gros1,2, Carolyn A Larabell1,2.   

Abstract

In the context of cell biology, the term mesoscale describes length scales ranging from that of an individual cell, down to the size of the molecular machines. In this spatial regime, small building blocks self-organise to form large, functional structures. A comprehensive set of rules governing mesoscale self-organisation has not been established, making the prediction of many cell behaviours difficult, if not impossible. Our knowledge of mesoscale biology comes from experimental data, in particular, imaging. Here, we explore the application of soft X-ray tomography (SXT) to imaging the mesoscale, and describe the structural insights this technology can generate. We also discuss how SXT imaging is complemented by the addition of correlative fluorescence data measured from the same cell. This combination of two discrete imaging modalities produces a 3D view of the cell that blends high-resolution structural information with precise molecular localisation data.
© 2016 Société Française des Microscopies and Société de Biologie Cellulaire de France. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  Correlated imaging; Cryogenic; Fluorescence; Soft X-ray; Tomography

Mesh:

Year:  2016        PMID: 27690365      PMCID: PMC5261833          DOI: 10.1111/boc.201600044

Source DB:  PubMed          Journal:  Biol Cell        ISSN: 0248-4900            Impact factor:   4.458


  86 in total

1.  The middle way.

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Review 2.  Timeline: the march of structural biology.

Authors:  Iain D Campbell
Journal:  Nat Rev Mol Cell Biol       Date:  2002-05       Impact factor: 94.444

3.  Cryo-electron microscopy of vitreous sections of native biological cells and tissues.

Authors:  Ashraf Al-Amoudi; Lars P O Norlen; Jacques Dubochet
Journal:  J Struct Biol       Date:  2004-10       Impact factor: 2.867

Review 4.  Building and breeding molecules to spy on cells and tumors.

Authors:  Roger Y Tsien
Journal:  FEBS Lett       Date:  2005-02-07       Impact factor: 4.124

5.  Cryoelectron microscopy of vitrified sections: a new challenge for the analysis of functional nuclear architecture.

Authors:  C Bouchet-Marquis; J Dubochet; S Fakan
Journal:  Histochem Cell Biol       Date:  2005-12-13       Impact factor: 4.304

Review 6.  Quantum dots as cellular probes.

Authors:  A Paul Alivisatos; Weiwei Gu; Carolyn Larabell
Journal:  Annu Rev Biomed Eng       Date:  2005       Impact factor: 9.590

7.  Nanoimaging cells using soft X-ray tomography.

Authors:  Dilworth Y Parkinson; Lindsay R Epperly; Gerry McDermott; Mark A Le Gros; Rosanne M Boudreau; Carolyn A Larabell
Journal:  Methods Mol Biol       Date:  2013

8.  X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution.

Authors:  Carolyn A Larabell; Mark A Le Gros
Journal:  Mol Biol Cell       Date:  2003-12-29       Impact factor: 4.138

9.  Life at the mesoscale: the self-organised cytoplasm and nucleoplasm.

Authors:  Richard P Sear; Ignacio Pagonabarraga; Andrew Flaus
Journal:  BMC Biophys       Date:  2015-02-25       Impact factor: 4.778

10.  Resolving new ultrastructural features of cytokinetic abscission with soft-X-ray cryo-tomography.

Authors:  Shachar Sherman; David Kirchenbuechler; Dikla Nachmias; Adi Tamir; Stephan Werner; Michael Elbaum; Natalie Elia
Journal:  Sci Rep       Date:  2016-06-10       Impact factor: 4.379

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  9 in total

Review 1.  Assaying three-dimensional cellular architecture using X-ray tomographic and correlated imaging approaches.

Authors:  Peter O Bayguinov; Max R Fisher; James A J Fitzpatrick
Journal:  J Biol Chem       Date:  2020-09-16       Impact factor: 5.157

2.  Soft X-ray tomography to map and quantify organelle interactions at the mesoscale.

Authors:  Valentina Loconte; Jitin Singla; Angdi Li; Jian-Hua Chen; Axel Ekman; Gerry McDermott; Andrej Sali; Mark Le Gros; Kate L White; Carolyn A Larabell
Journal:  Structure       Date:  2022-02-10       Impact factor: 5.871

3.  Securing the future of research computing in the biosciences.

Authors:  Joanna Leng; Massa Shoura; Tom C B McLeish; Alan N Real; Mariann Hardey; James McCafferty; Neil A Ranson; Sarah A Harris
Journal:  PLoS Comput Biol       Date:  2019-05-16       Impact factor: 4.475

Review 4.  Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology.

Authors:  Chris A Brosey; John A Tainer
Journal:  Curr Opin Struct Biol       Date:  2019-06-13       Impact factor: 6.809

5.  Cryo-soft X-ray tomography: using soft X-rays to explore the ultrastructure of whole cells.

Authors:  Maria Harkiolaki; Michele C Darrow; Matthew C Spink; Ewelina Kosior; Kyle Dent; Elizabeth Duke
Journal:  Emerg Top Life Sci       Date:  2018-04-20

6.  Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography.

Authors:  Kate L White; Jitin Singla; Valentina Loconte; Jian-Hua Chen; Axel Ekman; Liping Sun; Xianjun Zhang; John Paul Francis; Angdi Li; Wen Lin; Kaylee Tseng; Gerry McDermott; Frank Alber; Andrej Sali; Carolyn Larabell; Raymond C Stevens
Journal:  Sci Adv       Date:  2020-12-09       Impact factor: 14.136

Review 7.  Imaging of Virus-Infected Cells with Soft X-ray Tomography.

Authors:  Damià Garriga; Francisco Javier Chichón; Bárbara M Calisto; Diego S Ferrero; Pablo Gastaminza; Eva Pereiro; Ana Joaquina Pérez-Berna
Journal:  Viruses       Date:  2021-10-20       Impact factor: 5.048

Review 8.  Advanced Light Source Analytical Techniques for Exploring the Biological Behavior and Fate of Nanomedicines.

Authors:  Mingjing Cao; Kai Zhang; Shuhan Zhang; Yaling Wang; Chunying Chen
Journal:  ACS Cent Sci       Date:  2022-08-01       Impact factor: 18.728

9.  An intensity-based post-processing tool for 3D instance segmentation of organelles in soft X-ray tomograms.

Authors:  Angdi Li; Shuning Zhang; Valentina Loconte; Yan Liu; Axel Ekman; Garth J Thompson; Andrej Sali; Raymond C Stevens; Kate White; Jitin Singla; Liping Sun
Journal:  PLoS One       Date:  2022-09-01       Impact factor: 3.752

  9 in total

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