Literature DB >> 27102684

Carbon-sulfur bond-forming reaction catalysed by the radical SAM enzyme HydE.

Roman Rohac1, Patricia Amara1, Alhosna Benjdia2, Lydie Martin1, Pauline Ruffié2, Adrien Favier3, Olivier Berteau2, Jean-Marie Mouesca4,5, Juan C Fontecilla-Camps1, Yvain Nicolet1.   

Abstract

Carbon-sulfur bond formation at aliphatic positions is a challenging reaction that is performed efficiently by radical S-adenosyl-L-methionine (SAM) enzymes. Here we report that 1,3-thiazolidines can act as ligands and substrates for the radical SAM enzyme HydE, which is involved in the assembly of the active site of [FeFe]-hydrogenase. Using X-ray crystallography, in vitro assays and NMR spectroscopy we identified a radical-based reaction mechanism that is best described as the formation of a C-centred radical that concomitantly attacks the sulfur atom of a thioether. To the best of our knowledge, this is the first example of a radical SAM enzyme that reacts directly on a sulfur atom instead of abstracting a hydrogen atom. Using theoretical calculations based on our high-resolution structures we followed the evolution of the electronic structure from SAM through to the formation of S-adenosyl-L-cysteine. Our results suggest that, at least in this case, the widely proposed and highly reactive 5'-deoxyadenosyl radical species that triggers the reaction in radical SAM enzymes is not an isolable intermediate.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27102684     DOI: 10.1038/nchem.2490

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  41 in total

1.  Radical Shuttling in a Protein: Ribose Pseudorotation Controls Alkyl-Radical Transfer in the Coenzyme B(12) Dependent Enzyme Glutamate Mutase This work was supported by the Österreichische Akademie der Wissenschaften (APART fellowship 614), the Österreichische Fonds zur Förderung der wissenschaftlichen Forschung (FWF-project 11599), and the European Commission (TMR project number ERB 4061 PL 95-0307). Crystallographic data were collected at the EMBL-beamline BW7B at DESY in Hamburg, Germany. We thank the beamline scientists for their assistance, and Ingrid Dreveny, Günter Gartler, Gerwald Jogl, and Oliver Sauer for their help during data collection. This research emerged from a collaboration with Prof. W. Buckel (Marburg) who supplied us with clones of the glutamate mutase proteins.

Authors:  Karl Gruber; Riikka Reitzer; Christoph Kratky
Journal:  Angew Chem Int Ed Engl       Date:  2001-09-17       Impact factor: 15.336

2.  Valence bond/broken symmetry analysis of the exchange coupling constant in copper(II) dimers. Ferromagnetic contribution exalted through combined ligand topology and (singlet) covalent-ionic mixing.

Authors:  Nicolas Onofrio; Jean-Marie Mouesca
Journal:  J Phys Chem A       Date:  2010-05-27       Impact factor: 2.781

3.  Two Fe-S clusters catalyze sulfur insertion by radical-SAM methylthiotransferases.

Authors:  Farhad Forouhar; Simon Arragain; Mohamed Atta; Serge Gambarelli; Jean-Marie Mouesca; Munif Hussain; Rong Xiao; Sylvie Kieffer-Jaquinod; Jayaraman Seetharaman; Thomas B Acton; Gaetano T Montelione; Etienne Mulliez; John F Hunt; Marc Fontecave
Journal:  Nat Chem Biol       Date:  2013-03-31       Impact factor: 15.040

4.  The stoichiometry and kinetics of the inducible cysteine desulfhydrase from Salmonella typhimurium.

Authors:  N M Kredich; L J Foote; B S Keenan
Journal:  J Biol Chem       Date:  1973-09-10       Impact factor: 5.157

5.  The x-ray crystal structure of lysine-2,3-aminomutase from Clostridium subterminale.

Authors:  Bryan W Lepore; Frank J Ruzicka; Perry A Frey; Dagmar Ringe
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-15       Impact factor: 11.205

Review 6.  The biosynthesis of thiol- and thioether-containing cofactors and secondary metabolites catalyzed by radical S-adenosylmethionine enzymes.

Authors:  Joseph T Jarrett
Journal:  J Biol Chem       Date:  2014-12-04       Impact factor: 5.157

7.  Structural basis for glycyl radical formation by pyruvate formate-lyase activating enzyme.

Authors:  Jessica L Vey; Jian Yang; Meng Li; William E Broderick; Joan B Broderick; Catherine L Drennan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

8.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  Binding energy in the one-electron reductive cleavage of S-adenosylmethionine in lysine 2,3-aminomutase, a radical SAM enzyme.

Authors:  Susan C Wang; Perry A Frey
Journal:  Biochemistry       Date:  2007-10-18       Impact factor: 3.162

10.  Menaquinone biosynthesis: formation of aminofutalosine requires a unique radical SAM enzyme.

Authors:  Nilkamal Mahanta; Dmytro Fedoseyenko; Tohru Dairi; Tadhg P Begley
Journal:  J Am Chem Soc       Date:  2013-10-07       Impact factor: 15.419

View more
  20 in total

1.  Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.

Authors:  Katherine M Davis; Kelsey R Schramma; William A Hansen; John P Bacik; Sagar D Khare; Mohammad R Seyedsayamdost; Nozomi Ando
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

2.  The binuclear cluster of [FeFe] hydrogenase is formed with sulfur donated by cysteine of an [Fe(Cys)(CO)2(CN)] organometallic precursor.

Authors:  Guodong Rao; Scott A Pattenaude; Katherine Alwan; Ninian J Blackburn; R David Britt; Thomas B Rauchfuss
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

3.  Radical SAM Enzyme HydE Generates Adenosylated Fe(I) Intermediates En Route to the [FeFe]-Hydrogenase Catalytic H-Cluster.

Authors:  Lizhi Tao; Scott A Pattenaude; Sumedh Joshi; Tadhg P Begley; Thomas B Rauchfuss; R David Britt
Journal:  J Am Chem Soc       Date:  2020-06-03       Impact factor: 15.419

4.  Structural and functional characterization of the hydrogenase-maturation HydF protein.

Authors:  Giorgio Caserta; Ludovic Pecqueur; Agnieszka Adamska-Venkatesh; Cecilia Papini; Souvik Roy; Vincent Artero; Mohamed Atta; Edward Reijerse; Wolfgang Lubitz; Marc Fontecave
Journal:  Nat Chem Biol       Date:  2017-05-29       Impact factor: 15.040

Review 5.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

Review 6.  Biosynthesis of the [FeFe] hydrogenase H-cluster via a synthetic [Fe(II)(CN)(CO)2(cysteinate)]- complex.

Authors:  R David Britt; Thomas B Rauchfuss
Journal:  Dalton Trans       Date:  2021-09-21       Impact factor: 4.569

7.  H-cluster assembly intermediates built on HydF by the radical SAM enzymes HydE and HydG.

Authors:  Amanda S Byer; Eric M Shepard; Michael W Ratzloff; Jeremiah N Betz; Paul W King; William E Broderick; Joan B Broderick
Journal:  J Biol Inorg Chem       Date:  2019-09-06       Impact factor: 3.358

8.  Active-Site Controlled, Jahn-Teller Enabled Regioselectivity in Reductive S-C Bond Cleavage of S-Adenosylmethionine in Radical SAM Enzymes.

Authors:  Stella Impano; Hao Yang; Richard J Jodts; Adrien Pagnier; Ryan Swimley; Elizabeth C McDaniel; Eric M Shepard; William E Broderick; Joan B Broderick; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2020-12-29       Impact factor: 15.419

9.  Crystal Structure of the [FeFe]-Hydrogenase Maturase HydE Bound to Complex-B.

Authors:  Roman Rohac; Lydie Martin; Liang Liu; Debashis Basu; Lizhi Tao; R David Britt; Thomas B Rauchfuss; Yvain Nicolet
Journal:  J Am Chem Soc       Date:  2021-05-28       Impact factor: 15.419

10.  HydG, the "dangler" iron, and catalytic production of free CO and CN-: implications for [FeFe]-hydrogenase maturation.

Authors:  Eric M Shepard; Stella Impano; Benjamin R Duffus; Adrien Pagnier; Kaitlin S Duschene; Jeremiah N Betz; Amanda S Byer; Amanda Galambas; Elizabeth C McDaniel; Hope Watts; Shawn E McGlynn; John W Peters; William E Broderick; Joan B Broderick
Journal:  Dalton Trans       Date:  2021-08-04       Impact factor: 4.569

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.