Literature DB >> 33372786

Active-Site Controlled, Jahn-Teller Enabled Regioselectivity in Reductive S-C Bond Cleavage of S-Adenosylmethionine in Radical SAM Enzymes.

Stella Impano1, Hao Yang2, Richard J Jodts2, Adrien Pagnier1, Ryan Swimley1, Elizabeth C McDaniel1, Eric M Shepard1, William E Broderick1, Joan B Broderick1, Brian M Hoffman2.   

Abstract

Catalysis by canonical radical S-adenosyl-l-methionine (SAM) enzymes involves electron transfer (ET) from [4Fe-4S]+ to SAM, generating an R3S0 radical that undergoes regioselective homolytic reductive cleavage of the S-C5' bond to generate the 5'-dAdo· radical. However, cryogenic photoinduced S-C bond cleavage has regioselectively yielded either 5'-dAdo· or ·CH3, and indeed, each of the three SAM S-C bonds can be regioselectively cleaved in an RS enzyme. This diversity highlights a longstanding central question: what controls regioselective homolytic S-C bond cleavage upon SAM reduction? We here provide an unexpected answer, founded on our observation that photoinduced S-C bond cleavage in multiple canonical RS enzymes reveals two enzyme classes: in one, photolysis forms 5'-dAdo·, and in another it forms ·CH3. The identity of the cleaved S-C bond correlates with SAM ribose conformation but not with positioning and orientation of the sulfonium center relative to the [4Fe-4S] cluster. We have recognized the reduced-SAM R3S0 radical is a (2E) state with its antibonding unpaired electron in an orbital doublet, which renders R3S0 Jahn-Teller (JT)-active and therefore subject to vibronically induced distortion. Active-site forces induce a JT distortion that localizes the odd electron in a single priority S-C antibond, which undergoes regioselective cleavage. In photolytic cleavage those forces act through control of the ribose conformation and are transmitted to the sulfur via the S-C5' bond, but during catalysis thermally induced conformational changes that enable ET from a cluster iron generate dominant additional forces that specifically select S-C5' for cleavage. This motion also can explain how 5'-dAdo· subsequently forms the organometallic intermediate Ω.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 33372786      PMCID: PMC7934139          DOI: 10.1021/jacs.0c10925

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  45 in total

1.  EPR study of the low-spin [d(3); S =(1)/(2)], Jahn-Teller-active, dinitrogen complex of a molybdenum trisamidoamine.

Authors:  Rebecca L McNaughton; Jia Min Chin; Walter W Weare; Richard R Schrock; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2007-03-07       Impact factor: 15.419

2.  Density-functional exchange-energy approximation with correct asymptotic behavior.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1988-09-15

3.  The role of S-adenosylmethionine in the lysine 2,3-aminomutase reaction.

Authors:  M Moss; P A Frey
Journal:  J Biol Chem       Date:  1987-11-05       Impact factor: 5.157

4.  Coordination of adenosylmethionine to a unique iron site of the [4Fe-4S] of pyruvate formate-lyase activating enzyme: a Mössbauer spectroscopic study.

Authors:  Carsten Krebs; William E Broderick; Timothy F Henshaw; Joan B Broderick; Boi Hanh Huynh
Journal:  J Am Chem Soc       Date:  2002-02-13       Impact factor: 15.419

5.  Experimental and theoretical EPR study of Jahn-Teller-active [HIPTN(3)N]MoL complexes (L = N(2), CO, NH(3)).

Authors:  Rebecca L McNaughton; Michael Roemelt; Jia Min Chin; Richard R Schrock; Frank Neese; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2010-06-30       Impact factor: 15.419

6.  Direct FeS cluster involvement in generation of a radical in lysine 2,3-aminomutase.

Authors:  N J Cosper; S J Booker; F Ruzicka; P A Frey; R A Scott
Journal:  Biochemistry       Date:  2000-12-26       Impact factor: 3.162

7.  [FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis.

Authors:  Jeremiah N Betz; Nicholas W Boswell; Corey J Fugate; Gemma L Holliday; Eyal Akiva; Anna G Scott; Patricia C Babbitt; John W Peters; Eric M Shepard; Joan B Broderick
Journal:  Biochemistry       Date:  2015-03-02       Impact factor: 3.162

Review 8.  Structural insights into radical generation by the radical SAM superfamily.

Authors:  Jessica L Vey; Catherine L Drennan
Journal:  Chem Rev       Date:  2011-03-03       Impact factor: 60.622

9.  Regioselectivity in the reductive bond cleavage of diarylalkylsulfonium salts: variation with driving force and structure of sulfuranyl radical intermediates.

Authors:  Jack A Kampmeier; A K M Mansurul Hoque; Franklin D Saeva; Donald K Wedegaertner; Pia Thomsen; Saif Ullah; Jacob Krake; Torben Lund
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

10.  X-ray structure of the [FeFe]-hydrogenase maturase HydE from Thermotoga maritima.

Authors:  Yvain Nicolet; Jon K Rubach; Matthew C Posewitz; Patricia Amara; Carole Mathevon; Mohamed Atta; Marc Fontecave; Juan C Fontecilla-Camps
Journal:  J Biol Chem       Date:  2008-04-08       Impact factor: 5.157

View more
  4 in total

1.  The B12-independent glycerol dehydratase activating enzyme from Clostridium butyricum cleaves SAM to produce 5'-deoxyadenosine and not 5'-deoxy-5'-(methylthio)adenosine.

Authors:  William G Walls; James D Moody; Elizabeth C McDaniel; Maria Villanueva; Eric M Shepard; William E Broderick; Joan B Broderick
Journal:  J Inorg Biochem       Date:  2021-11-12       Impact factor: 4.155

2.  Mechanism of Radical S-Adenosyl-l-methionine Adenosylation: Radical Intermediates and the Catalytic Competence of the 5'-Deoxyadenosyl Radical.

Authors:  Maike N Lundahl; Raymond Sarksian; Hao Yang; Richard J Jodts; Adrien Pagnier; Donald F Smith; Martín A Mosquera; Wilfred A van der Donk; Brian M Hoffman; William E Broderick; Joan B Broderick
Journal:  J Am Chem Soc       Date:  2022-03-08       Impact factor: 16.383

Review 3.  Computational Approaches: An Underutilized Tool in the Quest to Elucidate Radical SAM Dynamics.

Authors:  Tamra C Blue; Katherine M Davis
Journal:  Molecules       Date:  2021-04-29       Impact factor: 4.411

4.  HydG, the "dangler" iron, and catalytic production of free CO and CN-: implications for [FeFe]-hydrogenase maturation.

Authors:  Eric M Shepard; Stella Impano; Benjamin R Duffus; Adrien Pagnier; Kaitlin S Duschene; Jeremiah N Betz; Amanda S Byer; Amanda Galambas; Elizabeth C McDaniel; Hope Watts; Shawn E McGlynn; John W Peters; William E Broderick; Joan B Broderick
Journal:  Dalton Trans       Date:  2021-08-04       Impact factor: 4.569

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.