Literature DB >> 25477512

The biosynthesis of thiol- and thioether-containing cofactors and secondary metabolites catalyzed by radical S-adenosylmethionine enzymes.

Joseph T Jarrett1.   

Abstract

Sulfur atoms are present as thiol and thioether functional groups in amino acids, coenzymes, cofactors, and various products of secondary metabolic pathways. The biosynthetic pathways for several sulfur-containing biomolecules require the substitution of sulfur for hydrogen at unreactive aliphatic or electron-rich aromatic carbon atoms. Examples discussed in this review include biotin, lipoic acid, methylthioether modifications found in some nucleic acids and proteins, and thioether cross-links found in peptide natural products. Radical S-adenosyl-L-methionine (SAM) enzymes use an iron-sulfur cluster to catalyze the reduction of SAM to methionine and a highly reactive 5'-deoxyadenosyl radical; this radical can abstract hydrogen atoms at unreactive positions, facilitating the introduction of a variety of functional groups. Radical SAM enzymes that catalyze sulfur insertion reactions contain a second iron-sulfur cluster that facilitates the chemistry, either by donating the cluster's endogenous sulfide or by binding and activating exogenous sulfide or sulfur-containing substrates. The use of radical chemistry involving iron-sulfur clusters is an efficient anaerobic route to the generation of carbon-sulfur bonds in cofactors, secondary metabolites, and other natural products.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Biotin, Lipoic Acid; Enzyme Catalysis; Enzyme Mechanism; Enzyme Structure; Iron-Sulfur Protein; Oxidation-Reduction (Redox); Radical; Radical Enzyme; S-Adenosylmethionine (SAM); Sulfhydryl; Sulfur; Thioether

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Substances:

Year:  2014        PMID: 25477512      PMCID: PMC4326807          DOI: 10.1074/jbc.R114.599308

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  37 in total

1.  The radical SAM enzyme AlbA catalyzes thioether bond formation in subtilosin A.

Authors:  Leif Flühe; Thomas A Knappe; Michael J Gattner; Antje Schäfer; Olaf Burghaus; Uwe Linne; Mohamed A Marahiel
Journal:  Nat Chem Biol       Date:  2012-02-26       Impact factor: 15.040

2.  9-Mercaptodethiobiotin is formed as a competent catalytic intermediate by Escherichia coli biotin synthase.

Authors:  Andrew M Taylor; Christine E Farrar; Joseph T Jarrett
Journal:  Biochemistry       Date:  2008-08-09       Impact factor: 3.162

Review 3.  Biosynthesis of biotin and lipoic acid.

Authors:  A Marquet; B T Bui; D Florentin
Journal:  Vitam Horm       Date:  2001       Impact factor: 3.421

4.  Identification of eukaryotic and prokaryotic methylthiotransferase for biosynthesis of 2-methylthio-N6-threonylcarbamoyladenosine in tRNA.

Authors:  Simon Arragain; Samuel K Handelman; Farhad Forouhar; Fan-Yan Wei; Kazuhito Tomizawa; John F Hunt; Thierry Douki; Marc Fontecave; Etienne Mulliez; Mohamed Atta
Journal:  J Biol Chem       Date:  2010-06-28       Impact factor: 5.157

5.  Reduction of the [2Fe-2S] cluster accompanies formation of the intermediate 9-mercaptodethiobiotin in Escherichia coli biotin synthase.

Authors:  Andrew M Taylor; Stefan Stoll; R David Britt; Joseph T Jarrett
Journal:  Biochemistry       Date:  2011-08-25       Impact factor: 3.162

6.  Biotin synthase exhibits burst kinetics and multiple turnovers in the absence of inhibition by products and product-related biomolecules.

Authors:  Christine E Farrar; Karen K W Siu; P Lynne Howell; Joseph T Jarrett
Journal:  Biochemistry       Date:  2010-11-01       Impact factor: 3.162

7.  S K-edge XAS and DFT calculations on SAM dependent pyruvate formate-lyase activating enzyme: nature of interaction between the Fe4S4 cluster and SAM and its role in reactivity.

Authors:  Abhishek Dey; Yi Peng; William E Broderick; Britt Hedman; Keith O Hodgson; Joan B Broderick; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2011-10-28       Impact factor: 15.419

Review 8.  Structural insights into radical generation by the radical SAM superfamily.

Authors:  Jessica L Vey; Catherine L Drennan
Journal:  Chem Rev       Date:  2011-03-03       Impact factor: 60.622

9.  MiaB protein is a bifunctional radical-S-adenosylmethionine enzyme involved in thiolation and methylation of tRNA.

Authors:  Fabien Pierrel; Thierry Douki; Marc Fontecave; Mohamed Atta
Journal:  J Biol Chem       Date:  2004-08-30       Impact factor: 5.157

10.  A complex between biotin synthase and the iron-sulfur cluster assembly chaperone HscA that enhances in vivo cluster assembly.

Authors:  Michael R Reyda; Corey J Fugate; Joseph T Jarrett
Journal:  Biochemistry       Date:  2009-11-17       Impact factor: 3.162

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  16 in total

1.  X-ray and EPR Characterization of the Auxiliary Fe-S Clusters in the Radical SAM Enzyme PqqE.

Authors:  Ian Barr; Troy A Stich; Anthony S Gizzi; Tyler L Grove; Jeffrey B Bonanno; John A Latham; Tyler Chung; Carrie M Wilmot; R David Britt; Steven C Almo; Judith P Klinman
Journal:  Biochemistry       Date:  2018-02-06       Impact factor: 3.162

Review 2.  Radical S-adenosylmethionine (SAM) enzymes in cofactor biosynthesis: a treasure trove of complex organic radical rearrangement reactions.

Authors:  Angad P Mehta; Sameh H Abdelwahed; Nilkamal Mahanta; Dmytro Fedoseyenko; Benjamin Philmus; Lisa E Cooper; Yiquan Liu; Isita Jhulki; Steven E Ealick; Tadhg P Begley
Journal:  J Biol Chem       Date:  2014-12-04       Impact factor: 5.157

3.  Carbon-sulfur bond-forming reaction catalysed by the radical SAM enzyme HydE.

Authors:  Roman Rohac; Patricia Amara; Alhosna Benjdia; Lydie Martin; Pauline Ruffié; Adrien Favier; Olivier Berteau; Jean-Marie Mouesca; Juan C Fontecilla-Camps; Yvain Nicolet
Journal:  Nat Chem       Date:  2016-04-04       Impact factor: 24.427

4.  Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides.

Authors:  Tyler L Grove; Paul M Himes; Sungwon Hwang; Hayretin Yumerefendi; Jeffrey B Bonanno; Brian Kuhlman; Steven C Almo; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2017-08-21       Impact factor: 15.419

Review 5.  Introduction to the thematic minireview series on radical S-adenosylmethionine (SAM) enzymes.

Authors:  Ruma Banerjee
Journal:  J Biol Chem       Date:  2014-12-04       Impact factor: 5.157

6.  Identification of the key functional genes in salt-stress tolerance of Cyanobacterium Phormidium tenue using in silico analysis.

Authors:  Mehrdad Shahbazi; Masoud Tohidfar; Maryam Azimzadeh Irani
Journal:  3 Biotech       Date:  2021-11-18       Impact factor: 2.406

Review 7.  Highlighting the Unique Roles of Radical S-Adenosylmethionine Enzymes in Methanogenic Archaea.

Authors:  Kaleb Boswinkle; Justin McKinney; Kylie D Allen
Journal:  J Bacteriol       Date:  2022-07-26       Impact factor: 3.476

8.  ThnL, a B12-dependent radical S-adenosylmethionine enzyme, catalyzes thioether bond formation in carbapenem biosynthesis.

Authors:  Erica K Sinner; Rongfeng Li; Daniel R Marous; Craig A Townsend
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-15       Impact factor: 12.779

9.  Two Radical SAM Enzymes Are Necessary and Sufficient for the In Vitro Production of the Oxetane Nucleoside Antiviral Agent Albucidin.

Authors:  Po-Hsun Fan; Yujie Geng; Anthony J Romo; Aoshu Zhong; Jiawei Zhang; Yu-Cheng Yeh; Yu-Hsuan Lee; Hung-Wen Liu
Journal:  Angew Chem Int Ed Engl       Date:  2022-09-20       Impact factor: 16.823

10.  First Step in Catalysis of the Radical S-Adenosylmethionine Methylthiotransferase MiaB Yields an Intermediate with a [3Fe-4S]0-Like Auxiliary Cluster.

Authors:  Bo Zhang; Arthur J Arcinas; Matthew I Radle; Alexey Silakov; Squire J Booker; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2020-01-16       Impact factor: 15.419

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