Literature DB >> 28553946

Structural and functional characterization of the hydrogenase-maturation HydF protein.

Giorgio Caserta1, Ludovic Pecqueur1, Agnieszka Adamska-Venkatesh2, Cecilia Papini1, Souvik Roy3, Vincent Artero3, Mohamed Atta3, Edward Reijerse2, Wolfgang Lubitz2, Marc Fontecave1.   

Abstract

[FeFe] hydrogenase (HydA) catalyzes interconversion between 2H+ and H2 at an active site composed of a [4Fe-4S] cluster linked to a 2Fe subcluster that harbors CO, CN- and azapropanedithiolate (adt2-) ligands. HydE, HydG and HydF are the maturases specifically involved in the biosynthesis of the 2Fe subcluster. Using ligands synthesized by HydE and HydG, HydF assembles a di-iron precursor of the 2Fe subcluster and transfers it to HydA for maturation. Here we report the first X-ray structure of HydF with its [4Fe-4S] cluster. The cluster is chelated by three cysteines and an exchangeable glutamate, which allows the binding of synthetic mimics of the 2Fe subcluster. [Fe2(adt)(CO)4(CN)2]2- is proposed to be the true di-iron precursor because, when bound to HydF, it matures HydA and displays features in Fourier transform infrared (FTIR) spectra that are similar to those of the native HydF active intermediate. A new route toward the generation of artificial hydrogenases, as combinations of HydF and such biomimetic complexes, is proposed on the basis of the observed hydrogenase activity of chemically modified HydF.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28553946     DOI: 10.1038/nchembio.2385

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  49 in total

1.  Crystal structure of HydF scaffold protein provides insights into [FeFe]-hydrogenase maturation.

Authors:  Laura Cendron; Paola Berto; Sarah D'Adamo; Francesca Vallese; Chiara Govoni; Matthew C Posewitz; Giorgio M Giacometti; Paola Costantini; Giuseppe Zanotti
Journal:  J Biol Chem       Date:  2011-11-04       Impact factor: 5.157

2.  EasySpin, a comprehensive software package for spectral simulation and analysis in EPR.

Authors:  Stefan Stoll; Arthur Schweiger
Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

3.  HydF as a scaffold protein in [FeFe] hydrogenase H-cluster biosynthesis.

Authors:  Shawn E McGlynn; Eric M Shepard; Mark A Winslow; Anatoli V Naumov; Kaitlin S Duschene; Matthew C Posewitz; William E Broderick; Joan B Broderick; John W Peters
Journal:  FEBS Lett       Date:  2008-05-22       Impact factor: 4.124

4.  Rapid colorimetric micromethod for the quantitation of complexed iron in biological samples.

Authors:  W W Fish
Journal:  Methods Enzymol       Date:  1988       Impact factor: 1.600

5.  From enzyme maturation to synthetic chemistry: the case of hydrogenases.

Authors:  Vincent Artero; Gustav Berggren; Mohamed Atta; Giorgio Caserta; Souvik Roy; Ludovic Pecqueur; Marc Fontecave
Journal:  Acc Chem Res       Date:  2015-07-13       Impact factor: 22.384

6.  Cysteine as a ligand platform in the biosynthesis of the FeFe hydrogenase H cluster.

Authors:  Daniel L M Suess; Ingmar Bürstel; Liliana De La Paz; Jon M Kuchenreuther; Cindy C Pham; Stephen P Cramer; James R Swartz; R David Britt
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

7.  An EPR/HYSCORE, Mössbauer, and resonance Raman study of the hydrogenase maturation enzyme HydF: a model for N-coordination to [4Fe-4S] clusters.

Authors:  Gustav Berggren; Ricardo Garcia-Serres; Xavier Brazzolotto; Martin Clemancey; Serge Gambarelli; Mohamed Atta; Jean-Marc Latour; Heather L Hernández; Sowmya Subramanian; Michael K Johnson; Marc Fontecave
Journal:  J Biol Inorg Chem       Date:  2013-11-17       Impact factor: 3.358

8.  phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta.

Authors:  Thomas C Terwilliger; Frank Dimaio; Randy J Read; David Baker; Gábor Bunkóczi; Paul D Adams; Ralf W Grosse-Kunstleve; Pavel V Afonine; Nathaniel Echols
Journal:  J Struct Funct Genomics       Date:  2012-03-15

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  11 in total

1.  The final steps of [FeFe]-hydrogenase maturation.

Authors:  Oliver Lampret; Julian Esselborn; Rieke Haas; Andreas Rutz; Rosalind L Booth; Leonie Kertess; Florian Wittkamp; Clare F Megarity; Fraser A Armstrong; Martin Winkler; Thomas Happe
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-23       Impact factor: 11.205

2.  The binuclear cluster of [FeFe] hydrogenase is formed with sulfur donated by cysteine of an [Fe(Cys)(CO)2(CN)] organometallic precursor.

Authors:  Guodong Rao; Scott A Pattenaude; Katherine Alwan; Ninian J Blackburn; R David Britt; Thomas B Rauchfuss
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

3.  Radical SAM Enzyme HydE Generates Adenosylated Fe(I) Intermediates En Route to the [FeFe]-Hydrogenase Catalytic H-Cluster.

Authors:  Lizhi Tao; Scott A Pattenaude; Sumedh Joshi; Tadhg P Begley; Thomas B Rauchfuss; R David Britt
Journal:  J Am Chem Soc       Date:  2020-06-03       Impact factor: 15.419

Review 4.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

5.  The oxygen-resistant [FeFe]-hydrogenase CbA5H harbors an unknown radical signal.

Authors:  Melanie Heghmanns; Andreas Rutz; Yury Kutin; Vera Engelbrecht; Martin Winkler; Thomas Happe; Müge Kasanmascheff
Journal:  Chem Sci       Date:  2022-06-07       Impact factor: 9.969

6.  [FeFe]-hydrogenase maturation: H-cluster assembly intermediates tracked by electron paramagnetic resonance, infrared, and X-ray absorption spectroscopy.

Authors:  Brigitta Németh; Moritz Senger; Holly J Redman; Pierre Ceccaldi; Joan Broderick; Ann Magnuson; Sven T Stripp; Michael Haumann; Gustav Berggren
Journal:  J Biol Inorg Chem       Date:  2020-07-13       Impact factor: 3.358

7.  The maturase HydF enables [FeFe] hydrogenase assembly via transient, cofactor-dependent interactions.

Authors:  Brigitta Németh; Henrik Land; Ann Magnuson; Anders Hofer; Gustav Berggren
Journal:  J Biol Chem       Date:  2020-07-03       Impact factor: 5.157

Review 8.  Overview of the Maturation Machinery of the H-Cluster of [FeFe]-Hydrogenases with a Focus on HydF.

Authors:  Marco Bortolus; Paola Costantini; Davide Doni; Donatella Carbonera
Journal:  Int J Mol Sci       Date:  2018-10-11       Impact factor: 5.923

9.  Crystal Structure of the [FeFe]-Hydrogenase Maturase HydE Bound to Complex-B.

Authors:  Roman Rohac; Lydie Martin; Liang Liu; Debashis Basu; Lizhi Tao; R David Britt; Thomas B Rauchfuss; Yvain Nicolet
Journal:  J Am Chem Soc       Date:  2021-05-28       Impact factor: 15.419

10.  HydG, the "dangler" iron, and catalytic production of free CO and CN-: implications for [FeFe]-hydrogenase maturation.

Authors:  Eric M Shepard; Stella Impano; Benjamin R Duffus; Adrien Pagnier; Kaitlin S Duschene; Jeremiah N Betz; Amanda S Byer; Amanda Galambas; Elizabeth C McDaniel; Hope Watts; Shawn E McGlynn; John W Peters; William E Broderick; Joan B Broderick
Journal:  Dalton Trans       Date:  2021-08-04       Impact factor: 4.569

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.