Literature DB >> 34048236

Crystal Structure of the [FeFe]-Hydrogenase Maturase HydE Bound to Complex-B.

Roman Rohac1, Lydie Martin1, Liang Liu2, Debashis Basu2, Lizhi Tao3, R David Britt3, Thomas B Rauchfuss2, Yvain Nicolet1.   

Abstract

[FeFe]-hydrogenases use a unique organometallic complex, termed the H cluster, to reversibly convert H2 into protons and low-potential electrons. It can be best described as a [Fe4S4] cluster coupled to a unique [2Fe]H center where the reaction actually takes place. The latter corresponds to two iron atoms, each of which is bound by one CN- ligand and one CO ligand. The two iron atoms are connected by a unique azadithiolate molecule (-S-CH2-NH-CH2-S-) and an additional bridging CO. This [2Fe]H center is built stepwise thanks to the well-orchestrated action of maturating enzymes that belong to the Hyd machinery. Among them, HydG converts l-tyrosine into CO and CN- to produce a unique l-cysteine-Fe(CO)2CN species termed complex-B. Very recently, HydE was shown to perform radical-based chemistry using synthetic complex-B as a substrate. Here we report the high-resolution crystal structure that establishes the identity of the complex-B-bound HydE. By triggering the reaction prior to crystallization, we trapped a new five-coordinate Fe species, supporting the proposal that HydE performs complex modifications of complex-B to produce a monomeric "SFe(CO)2CN" precursor to the [2Fe]H center. Substrate access, product release, and intermediate transfer are also discussed.

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Year:  2021        PMID: 34048236      PMCID: PMC8300475          DOI: 10.1021/jacs.1c03367

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  34 in total

Review 1.  Emerging paradigms for complex iron-sulfur cofactor assembly and insertion.

Authors:  John W Peters; Joan B Broderick
Journal:  Annu Rev Biochem       Date:  2012-04-05       Impact factor: 23.643

2.  The [Fe-Fe]-hydrogenase maturation protein HydF from Thermotoga maritima is a GTPase with an iron-sulfur cluster.

Authors:  Xavier Brazzolotto; Jon K Rubach; Jacques Gaillard; Serge Gambarelli; Mohamed Atta; Marc Fontecave
Journal:  J Biol Chem       Date:  2005-11-08       Impact factor: 5.157

3.  CO and CN- syntheses by [FeFe]-hydrogenase maturase HydG are catalytically differentiated events.

Authors:  Adrien Pagnier; Lydie Martin; Laura Zeppieri; Yvain Nicolet; Juan C Fontecilla-Camps
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

4.  A radical intermediate in tyrosine scission to the CO and CN- ligands of FeFe hydrogenase.

Authors:  Jon M Kuchenreuther; William K Myers; Troy A Stich; Simon J George; Yaser Nejatyjahromy; James R Swartz; R David Britt
Journal:  Science       Date:  2013-10-25       Impact factor: 47.728

5.  L-cysteine desulfidase: an [4Fe-4S] enzyme isolated from Methanocaldococcus jannaschii that catalyzes the breakdown of L-cysteine into pyruvate, ammonia, and sulfide.

Authors:  Shih-I Tchong; Huimin Xu; Robert H White
Journal:  Biochemistry       Date:  2005-02-08       Impact factor: 3.162

6.  IscS from Archaeoglobus fulgidus has no desulfurase activity but may provide a cysteine ligand for [Fe2S2] cluster assembly.

Authors:  Adrien Pagnier; Yvain Nicolet; Juan C Fontecilla-Camps
Journal:  Biochim Biophys Acta       Date:  2014-10-28

7.  Radical SAM Enzyme HydE Generates Adenosylated Fe(I) Intermediates En Route to the [FeFe]-Hydrogenase Catalytic H-Cluster.

Authors:  Lizhi Tao; Scott A Pattenaude; Sumedh Joshi; Tadhg P Begley; Thomas B Rauchfuss; R David Britt
Journal:  J Am Chem Soc       Date:  2020-06-03       Impact factor: 15.419

8.  X-ray structure of the [FeFe]-hydrogenase maturase HydE from Thermotoga maritima.

Authors:  Yvain Nicolet; Jon K Rubach; Matthew C Posewitz; Patricia Amara; Carole Mathevon; Mohamed Atta; Marc Fontecave; Juan C Fontecilla-Camps
Journal:  J Biol Chem       Date:  2008-04-08       Impact factor: 5.157

9.  H-cluster assembly intermediates built on HydF by the radical SAM enzymes HydE and HydG.

Authors:  Amanda S Byer; Eric M Shepard; Michael W Ratzloff; Jeremiah N Betz; Paul W King; William E Broderick; Joan B Broderick
Journal:  J Biol Inorg Chem       Date:  2019-09-06       Impact factor: 3.358

10.  Biosynthesis of the [FeFe] Hydrogenase H Cluster: A Central Role for the Radical SAM Enzyme HydG.

Authors:  Daniel L M Suess; Jon M Kuchenreuther; Liliana De La Paz; James R Swartz; R David Britt
Journal:  Inorg Chem       Date:  2015-12-24       Impact factor: 5.165

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  6 in total

Review 1.  Biosynthesis of the [FeFe] hydrogenase H-cluster via a synthetic [Fe(II)(CN)(CO)2(cysteinate)]- complex.

Authors:  R David Britt; Thomas B Rauchfuss
Journal:  Dalton Trans       Date:  2021-09-21       Impact factor: 4.569

2.  Synthesis and Dynamics of Ferrous Polychalcogenides [Fe(Ex)(CN)2(CO)2]2- (E = S, Se, or Te).

Authors:  Yu Zhang; Toby Woods; Thomas B Rauchfuss
Journal:  Inorg Chem       Date:  2022-05-13       Impact factor: 5.436

3.  [FeFe]-Hydrogenase: Defined Lysate-Free Maturation Reveals a Key Role for Lipoyl-H-Protein in DTMA Ligand Biosynthesis.

Authors:  Adrien Pagnier; Batuhan Balci; Eric M Shepard; Hao Yang; Douglas M Warui; Stella Impano; Squire J Booker; Brian M Hoffman; William E Broderick; Joan B Broderick
Journal:  Angew Chem Int Ed Engl       Date:  2022-04-11       Impact factor: 16.823

4.  L-tyrosine-bound ThiH structure reveals C-C bond break differences within radical SAM aromatic amino acid lyases.

Authors:  Patricia Amara; Claire Saragaglia; Jean-Marie Mouesca; Lydie Martin; Yvain Nicolet
Journal:  Nat Commun       Date:  2022-04-27       Impact factor: 17.694

5.  Organometallic Fe2(μ-SH)2(CO)4(CN)2 Cluster Allows the Biosynthesis of the [FeFe]-Hydrogenase with Only the HydF Maturase.

Authors:  Yu Zhang; Lizhi Tao; Toby J Woods; R David Britt; Thomas B Rauchfuss
Journal:  J Am Chem Soc       Date:  2022-01-18       Impact factor: 16.383

Review 6.  Proposed Mechanism for the Biosynthesis of the [FeFe] Hydrogenase H-Cluster: Central Roles for the Radical SAM Enzymes HydG and HydE.

Authors:  R David Britt; Lizhi Tao; Guodong Rao; Nanhao Chen; Lee-Ping Wang
Journal:  ACS Bio Med Chem Au       Date:  2021-10-27
  6 in total

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