Literature DB >> 27100964

DNA-free genome editing methods for targeted crop improvement.

Chidananda Nagamangala Kanchiswamy1.   

Abstract

Evolution of the next-generation clustered, regularly interspaced, short palindromic repeat/Cas9 (CRISPR/Cas9) genome editing tools, ribonucleoprotein (RNA)-guided endonuclease (RGEN) RNPs, is paving the way for developing DNA-free genetically edited crop plants. In this review, I discuss the various methods of RGEN RNPs tool delivery into plant cells and their limitations to adopt this technology to numerous crop plants. Furthermore, focus is given on the importance of developing DNA-free genome edited crop plants, including perennial crop plants. The possible regulation on the DNA-free, next-generation genome-edited crop plants is also highlighted.

Entities:  

Keywords:  CRISPR/Cas9; Genome editing; RGEN; RGEN RNPs

Mesh:

Year:  2016        PMID: 27100964     DOI: 10.1007/s00299-016-1982-2

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  40 in total

1.  Tiptoeing around transgenics.

Authors:  Emily Waltz
Journal:  Nat Biotechnol       Date:  2012-03-07       Impact factor: 54.908

Review 2.  Multi-gene engineering in plants with RNA-guided Cas9 nuclease.

Authors:  Oleg Raitskin; Nicola J Patron
Journal:  Curr Opin Biotechnol       Date:  2015-12-18       Impact factor: 9.740

3.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

4.  CasOT: a genome-wide Cas9/gRNA off-target searching tool.

Authors:  An Xiao; Zhenchao Cheng; Lei Kong; Zuoyan Zhu; Shuo Lin; Ge Gao; Bo Zhang
Journal:  Bioinformatics       Date:  2014-01-02       Impact factor: 6.937

5.  Improved soybean oil quality by targeted mutagenesis of the fatty acid desaturase 2 gene family.

Authors:  William Haun; Andrew Coffman; Benjamin M Clasen; Zachary L Demorest; Anita Lowy; Erin Ray; Adam Retterath; Thomas Stoddard; Alexandre Juillerat; Frederic Cedrone; Luc Mathis; Daniel F Voytas; Feng Zhang
Journal:  Plant Biotechnol J       Date:  2014-05-23       Impact factor: 9.803

6.  Flexible guide-RNA design for CRISPR applications using Protospacer Workbench.

Authors:  Cameron Ross MacPherson; Artur Scherf
Journal:  Nat Biotechnol       Date:  2015-06-29       Impact factor: 54.908

7.  Targeted chromosomal duplications and inversions in the human genome using zinc finger nucleases.

Authors:  Hyung Joo Lee; Jiyeon Kweon; Eunji Kim; Seokjoong Kim; Jin-Soo Kim
Journal:  Genome Res       Date:  2011-12-19       Impact factor: 9.043

Review 8.  Measuring and Reducing Off-Target Activities of Programmable Nucleases Including CRISPR-Cas9.

Authors:  Taeyoung Koo; Jungjoon Lee; Jin-Soo Kim
Journal:  Mol Cells       Date:  2015-05-19       Impact factor: 5.034

9.  CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.

Authors:  Prashant Mali; John Aach; P Benjamin Stranges; Kevin M Esvelt; Mark Moosburner; Sriram Kosuri; Luhan Yang; George M Church
Journal:  Nat Biotechnol       Date:  2013-08-01       Impact factor: 54.908

10.  CRISPRseek: a bioconductor package to identify target-specific guide RNAs for CRISPR-Cas9 genome-editing systems.

Authors:  Lihua J Zhu; Benjamin R Holmes; Neil Aronin; Michael H Brodsky
Journal:  PLoS One       Date:  2014-09-23       Impact factor: 3.240

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  12 in total

Review 1.  Applying gene editing to tailor precise genetic modifications in plants.

Authors:  Joyce Van Eck
Journal:  J Biol Chem       Date:  2020-07-28       Impact factor: 5.157

Review 2.  New GMO regulations for old: Determining a new future for EU crop biotechnology.

Authors:  John Davison; Klaus Ammann
Journal:  GM Crops Food       Date:  2017-01-02       Impact factor: 3.074

3.  Next-generation precision genome engineering and plant biotechnology.

Authors:  Magdy M Mahfouz; Teodoro Cardi; C Neal Stewart
Journal:  Plant Cell Rep       Date:  2016-06-06       Impact factor: 4.570

Review 4.  Application and future perspective of CRISPR/Cas9 genome editing in fruit crops.

Authors:  Junhui Zhou; Dongdong Li; Guoming Wang; Fuxi Wang; Merixia Kunjal; Dirk Joldersma; Zhongchi Liu
Journal:  J Integr Plant Biol       Date:  2019-04-19       Impact factor: 7.061

Review 5.  Engineering Plant Immunity: Using CRISPR/Cas9 to Generate Virus Resistance.

Authors:  Syed Shan-E-Ali Zaidi; Manal Tashkandi; Shahid Mansoor; Magdy M Mahfouz
Journal:  Front Plant Sci       Date:  2016-11-08       Impact factor: 5.753

6.  DNA-Free Genetically Edited Grapevine and Apple Protoplast Using CRISPR/Cas9 Ribonucleoproteins.

Authors:  Mickael Malnoy; Roberto Viola; Min-Hee Jung; Ok-Jae Koo; Seokjoong Kim; Jin-Soo Kim; Riccardo Velasco; Chidananda Nagamangala Kanchiswamy
Journal:  Front Plant Sci       Date:  2016-12-20       Impact factor: 5.753

7.  Genome editing in maize directed by CRISPR-Cas9 ribonucleoprotein complexes.

Authors:  Sergei Svitashev; Christine Schwartz; Brian Lenderts; Joshua K Young; A Mark Cigan
Journal:  Nat Commun       Date:  2016-11-16       Impact factor: 14.919

Review 8.  CRISPR/Cas9: A Practical Approach in Date Palm Genome Editing.

Authors:  Muhammad N Sattar; Zafar Iqbal; Muhammad N Tahir; Muhammad S Shahid; Muhammad Khurshid; Abdullatif A Al-Khateeb; Suliman A Al-Khateeb
Journal:  Front Plant Sci       Date:  2017-08-23       Impact factor: 5.753

9.  An EU Perspective on Biosafety Considerations for Plants Developed by Genome Editing and Other New Genetic Modification Techniques (nGMs).

Authors:  Michael F Eckerstorfer; Marion Dolezel; Andreas Heissenberger; Marianne Miklau; Wolfram Reichenbecher; Ricarda A Steinbrecher; Friedrich Waßmann
Journal:  Front Bioeng Biotechnol       Date:  2019-03-05

10.  PEG-Delivered CRISPR-Cas9 Ribonucleoproteins System for Gene-Editing Screening of Maize Protoplasts.

Authors:  Rodrigo Ribeiro Arnt Sant'Ana; Clarissa Alves Caprestano; Rubens Onofre Nodari; Sarah Zanon Agapito-Tenfen
Journal:  Genes (Basel)       Date:  2020-09-02       Impact factor: 4.096

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