Literature DB >> 26121414

Flexible guide-RNA design for CRISPR applications using Protospacer Workbench.

Cameron Ross MacPherson1, Artur Scherf1.   

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Year:  2015        PMID： 26121414     DOI： 10.1038/nbt.3291

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  7 in total

1.  E-CRISP: fast CRISPR target site identification.

Authors:  Florian Heigwer; Grainne Kerr; Michael Boutros
Journal:  Nat Methods       Date:  2014-02       Impact factor: 28.547

2.  Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation.

Authors:  John G Doench; Ella Hartenian; Daniel B Graham; Zuzana Tothova; Mudra Hegde; Ian Smith; Meagan Sullender; Benjamin L Ebert; Ramnik J Xavier; David E Root
Journal:  Nat Biotechnol       Date:  2014-09-03       Impact factor: 54.908

3.  DNA targeting specificity of RNA-guided Cas9 nucleases.

Authors:  Patrick D Hsu; David A Scott; Joshua A Weinstein; F Ann Ran; Silvana Konermann; Vineeta Agarwala; Yinqing Li; Eli J Fine; Xuebing Wu; Ophir Shalem; Thomas J Cradick; Luciano A Marraffini; Gang Bao; Feng Zhang
Journal:  Nat Biotechnol       Date:  2013-07-21       Impact factor: 54.908

4.  Genome editing in the human malaria parasite Plasmodium falciparum using the CRISPR-Cas9 system.

Authors:  Mehdi Ghorbal; Molly Gorman; Cameron Ross Macpherson; Rafael Miyazawa Martins; Artur Scherf; Jose-Juan Lopez-Rubio
Journal:  Nat Biotechnol       Date:  2014-06-01       Impact factor: 54.908

5.  Integrative genomics viewer.

Authors:  James T Robinson; Helga Thorvaldsdóttir; Wendy Winckler; Mitchell Guttman; Eric S Lander; Gad Getz; Jill P Mesirov
Journal:  Nat Biotechnol       Date:  2011-01       Impact factor: 54.908

6.  sgRNAcas9: a software package for designing CRISPR sgRNA and evaluating potential off-target cleavage sites.

Authors:  Shengsong Xie; Bin Shen; Chaobao Zhang; Xingxu Huang; Yonglian Zhang
Journal:  PLoS One       Date:  2014-06-23       Impact factor: 3.240

7.  Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.

Authors:  Jeffry D Sander; Peter Zaback; J Keith Joung; Daniel F Voytas; Drena Dobbs
Journal:  Nucleic Acids Res       Date:  2007-05-25       Impact factor: 16.971
  7 in total
  32 in total

Review 1.  How specific is CRISPR/Cas9 really?

Authors:  Henriette O'Geen; Abigail S Yu; David J Segal
Journal:  Curr Opin Chem Biol       Date:  2015-10-24       Impact factor: 8.822

Review 2.  DNA-free genome editing methods for targeted crop improvement.

Authors:  Chidananda Nagamangala Kanchiswamy
Journal:  Plant Cell Rep       Date:  2016-04-21       Impact factor: 4.570

Review 3.  The big bang of genome editing technology: development and application of the CRISPR/Cas9 system in disease animal models.

Authors:  Ming Shao; Tian-Rui Xu; Ce-Shi Chen
Journal:  Dongwuxue Yanjiu       Date:  2016-07-18

4.  Plasmodium falciparum In Vitro Drug Resistance Selections and Gene Editing.

Authors:  Caroline L Ng; David A Fidock
Journal:  Methods Mol Biol       Date:  2019

5.  Computational Approaches for Designing Highly Specific and Efficient sgRNAs.

Authors:  Jaspreet Kaur Dhanjal; Dhvani Vora; Navaneethan Radhakrishnan; Durai Sundar
Journal:  Methods Mol Biol       Date:  2022

Review 6.  CRISPR/Cas9 Editing of the Plasmodium falciparum Genome.

Authors:  Sophie Adjalley; Marcus Chee San Lee
Journal:  Methods Mol Biol       Date:  2022

Review 7.  CRISPR-Based Genome Editing: Advancements and Opportunities for Rice Improvement.

Authors:  Workie Anley Zegeye; Mesfin Tsegaw; Yingxin Zhang; Liyong Cao
Journal:  Int J Mol Sci       Date:  2022-04-18       Impact factor: 6.208

8.  Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage.

Authors:  Eric A Josephs; D Dewran Kocak; Christopher J Fitzgibbon; Joshua McMenemy; Charles A Gersbach; Piotr E Marszalek
Journal:  Nucleic Acids Res       Date:  2015-09-17       Impact factor: 16.971

9.  Novel insights into the composition and function of the Toxoplasma IMC sutures.

Authors:  Allan L Chen; Andy S Moon; Hannah N Bell; Amy S Huang; Ajay A Vashisht; Justin Y Toh; Andrew H Lin; Santhosh M Nadipuram; Elliot W Kim; Charles P Choi; James A Wohlschlegel; Peter J Bradley
Journal:  Cell Microbiol       Date:  2016-11-24       Impact factor: 3.715

10.  Transcriptome-wide dynamics of extensive m6A mRNA methylation during Plasmodium falciparum blood-stage development.

Authors:  Sebastian Baumgarten; Jessica M Bryant; Ameya Sinha; Thibaud Reyser; Peter R Preiser; Peter C Dedon; Artur Scherf
Journal:  Nat Microbiol       Date:  2019-08-05       Impact factor: 17.745
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