Literature DB >> 27091986

Tissue-specific DNA demethylation is required for proper B-cell differentiation and function.

Shari Orlanski1, Verena Labi2, Yitzhak Reizel1, Adam Spiro1, Michal Lichtenstein1, Rena Levin-Klein1, Sergei B Koralov3, Yael Skversky1, Klaus Rajewsky4, Howard Cedar1, Yehudit Bergman5.   

Abstract

There is ample evidence that somatic cell differentiation during development is accompanied by extensive DNA demethylation of specific sites that vary between cell types. Although the mechanism of this process has not yet been elucidated, it is likely to involve the conversion of 5mC to 5hmC by Tet enzymes. We show that a Tet2/Tet3 conditional knockout at early stages of B-cell development largely prevents lineage-specific programmed demethylation events. This lack of demethylation affects the expression of nearby B-cell lineage genes by impairing enhancer activity, thus causing defects in B-cell differentiation and function. Thus, tissue-specific DNA demethylation appears to be necessary for proper somatic cell development in vivo.

Entities:  

Keywords:  DMRs; Tet2/Tet3; chromatin; differentially methylated regions

Mesh:

Substances:

Year:  2016        PMID: 27091986      PMCID: PMC4983829          DOI: 10.1073/pnas.1604365113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  69 in total

1.  Activation of the early B-cell-specific mb-1 (Ig-alpha) gene by Pax-5 is dependent on an unmethylated Ets binding site.

Authors:  Holly Maier; Jeff Colbert; Daniel Fitzsimmons; Dawn R Clark; James Hagman
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

2.  The B-cell identity factor Pax5 regulates distinct transcriptional programmes in early and late B lymphopoiesis.

Authors:  Roger Revilla-I-Domingo; Ivan Bilic; Bojan Vilagos; Hiromi Tagoh; Anja Ebert; Ido M Tamir; Leonie Smeenk; Johanna Trupke; Andreas Sommer; Markus Jaritz; Meinrad Busslinger
Journal:  EMBO J       Date:  2012-06-05       Impact factor: 11.598

3.  TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.

Authors:  Kristine Williams; Jesper Christensen; Marianne Terndrup Pedersen; Jens V Johansen; Paul A C Cloos; Juri Rappsilber; Kristian Helin
Journal:  Nature       Date:  2011-04-13       Impact factor: 49.962

4.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

5.  MethPrimer: designing primers for methylation PCRs.

Authors:  Long-Cheng Li; Rajvir Dahiya
Journal:  Bioinformatics       Date:  2002-11       Impact factor: 6.937

6.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

Review 7.  TET enzymes and DNA hydroxymethylation in neural development and function - how critical are they?

Authors:  Mafalda Santiago; Claudia Antunes; Marta Guedes; Nuno Sousa; C Joana Marques
Journal:  Genomics       Date:  2014-09-06       Impact factor: 5.736

8.  Ten-eleven translocation 1 (Tet1) is regulated by O-linked N-acetylglucosamine transferase (Ogt) for target gene repression in mouse embryonic stem cells.

Authors:  Feng-Tao Shi; Hyeung Kim; Weisi Lu; Quanyuan He; Dan Liu; Margaret A Goodell; Ma Wan; Zhou Songyang
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

9.  Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis.

Authors:  Kasper D Rasmussen; Guangshuai Jia; Jens V Johansen; Marianne T Pedersen; Nicolas Rapin; Frederik O Bagger; Bo T Porse; Olivier A Bernard; Jesper Christensen; Kristian Helin
Journal:  Genes Dev       Date:  2015-04-17       Impact factor: 11.361

10.  Role of Tet proteins in enhancer activity and telomere elongation.

Authors:  Falong Lu; Yuting Liu; Lan Jiang; Shinpei Yamaguchi; Yi Zhang
Journal:  Genes Dev       Date:  2014-09-15       Impact factor: 11.361

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  44 in total

1.  Role of transcription complexes in the formation of the basal methylation pattern in early development.

Authors:  Razi Greenfield; Amalia Tabib; Ilana Keshet; Joshua Moss; Ofra Sabag; Alon Goren; Howard Cedar
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-26       Impact factor: 11.205

Review 2.  Dysregulation of the TET family of epigenetic regulators in lymphoid and myeloid malignancies.

Authors:  Chan-Wang J Lio; Hiroshi Yuita; Anjana Rao
Journal:  Blood       Date:  2019-10-31       Impact factor: 22.113

3.  Restricted TET2 Expression in Germinal Center Type B Cells Promotes Stringent Epstein-Barr Virus Latency.

Authors:  Coral K Wille; Yangguang Li; Lixin Rui; Eric C Johannsen; Shannon C Kenney
Journal:  J Virol       Date:  2017-02-14       Impact factor: 5.103

4.  TET enzymes augment activation-induced deaminase (AID) expression via 5-hydroxymethylcytosine modifications at the Aicda superenhancer.

Authors:  Chan-Wang J Lio; Vipul Shukla; Daniela Samaniego-Castruita; Edahi González-Avalos; Abhijit Chakraborty; Xiaojing Yue; David G Schatz; Ferhat Ay; Anjana Rao
Journal:  Sci Immunol       Date:  2019-04-26

5.  Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity.

Authors:  Shinya Tanaka; Wataru Ise; Takeshi Inoue; Ayako Ito; Chisato Ono; Yoshihito Shima; Shuhei Sakakibara; Manabu Nakayama; Kentaro Fujii; Ikuo Miura; Jafar Sharif; Haruhiko Koseki; Pandelakis A Koni; Indu Raman; Quan-Zhen Li; Masato Kubo; Katsunori Fujiki; Ryuichiro Nakato; Katsuhiko Shirahige; Hiromitsu Araki; Fumihito Miura; Takashi Ito; Eiryo Kawakami; Yoshihiro Baba; Tomohiro Kurosaki
Journal:  Nat Immunol       Date:  2020-06-22       Impact factor: 25.606

Review 6.  TET-mediated active DNA demethylation: mechanism, function and beyond.

Authors:  Xiaoji Wu; Yi Zhang
Journal:  Nat Rev Genet       Date:  2017-05-30       Impact factor: 53.242

Review 7.  TET proteins in natural and induced differentiation.

Authors:  James P Scott-Browne; Chan-Wang J Lio; Anjana Rao
Journal:  Curr Opin Genet Dev       Date:  2017-09-06       Impact factor: 5.578

Review 8.  Epigenetic dynamics in normal and malignant B cells: die a hero or live to become a villain.

Authors:  Jared M Andrews; Jacqueline E Payton
Journal:  Curr Opin Immunol       Date:  2018-10-17       Impact factor: 7.486

Review 9.  Circles of Life: linking metabolic and epigenetic cycles to immunity.

Authors:  Chan-Wang Jerry Lio; Stanley Ching-Cheng Huang
Journal:  Immunology       Date:  2020-06-03       Impact factor: 7.397

10.  FoxA-dependent demethylation of DNA initiates epigenetic memory of cellular identity.

Authors:  Yitzhak Reizel; Ashleigh Morgan; Long Gao; Jonathan Schug; Sarmistha Mukherjee; Meilín Fernández García; Greg Donahue; Joseph A Baur; Kenneth S Zaret; Klaus H Kaestner
Journal:  Dev Cell       Date:  2021-02-25       Impact factor: 12.270

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