Literature DB >> 30342313

Epigenetic dynamics in normal and malignant B cells: die a hero or live to become a villain.

Jared M Andrews1, Jacqueline E Payton2.   

Abstract

Normal B cell development, activation, and terminal differentiation depend on the intricate dynamics of cooperating epigenetic and non-coding components to control the level and timing of expression of thousands of genes. Recent genome-wide studies have integratively mapped changes in the chromatin landscape, DNA methylome, 3-dimensional interactome, and coding and non-coding transcriptomes of normal and malignant B cells. Genetic ablation in human cells and mouse models has begun to elucidate the coordinated roles of essential epigenetic modifiers, key transcription factors, and long non-coding RNAs in B cell biology. Perturbation of these stewards of the epigenome drive B cell oncogenesis, but may be exploited to develop new avenues of therapy.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30342313      PMCID: PMC6470061          DOI: 10.1016/j.coi.2018.09.020

Source DB:  PubMed          Journal:  Curr Opin Immunol        ISSN: 0952-7915            Impact factor:   7.486


  61 in total

1.  p53-dependent non-coding RNA networks in chronic lymphocytic leukemia.

Authors:  C J Blume; A Hotz-Wagenblatt; J Hüllein; L Sellner; A Jethwa; T Stolz; M Slabicki; K Lee; A Sharathchandra; A Benner; S Dietrich; C C Oakes; P Dreger; D te Raa; A P Kater; A Jauch; O Merkel; M Oren; T Hielscher; T Zenz
Journal:  Leukemia       Date:  2015-05-14       Impact factor: 11.528

2.  CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells.

Authors:  S John Liu; Max A Horlbeck; Seung Woo Cho; Harjus S Birk; Martina Malatesta; Daniel He; Frank J Attenello; Jacqueline E Villalta; Min Y Cho; Yuwen Chen; Mohammad A Mandegar; Michael P Olvera; Luke A Gilbert; Bruce R Conklin; Howard Y Chang; Jonathan S Weissman; Daniel A Lim
Journal:  Science       Date:  2016-12-15       Impact factor: 47.728

Review 3.  Evolution to the rescue: using comparative genomics to understand long non-coding RNAs.

Authors:  Igor Ulitsky
Journal:  Nat Rev Genet       Date:  2016-08-30       Impact factor: 53.242

4.  EZH2 Represses the B Cell Transcriptional Program and Regulates Antibody-Secreting Cell Metabolism and Antibody Production.

Authors:  Muyao Guo; Madeline J Price; Dillon G Patterson; Benjamin G Barwick; Robert R Haines; Anna K Kania; John E Bradley; Troy D Randall; Jeremy M Boss; Christopher D Scharer
Journal:  J Immunol       Date:  2017-12-29       Impact factor: 5.422

5.  MINCR is a MYC-induced lncRNA able to modulate MYC's transcriptional network in Burkitt lymphoma cells.

Authors:  Gero Doose; Andrea Haake; Stephan H Bernhart; Cristina López; Sujitha Duggimpudi; Franziska Wojciech; Anke K Bergmann; Arndt Borkhardt; Birgit Burkhardt; Alexander Claviez; Lora Dimitrova; Siegfried Haas; Jessica I Hoell; Michael Hummel; Dennis Karsch; Wolfram Klapper; Karsten Kleo; Helene Kretzmer; Markus Kreuz; Ralf Küppers; Chris Lawerenz; Dido Lenze; Markus Loeffler; Luisa Mantovani-Löffler; Peter Möller; German Ott; Julia Richter; Marius Rohde; Philip Rosenstiel; Andreas Rosenwald; Markus Schilhabel; Markus Schneider; Ingrid Scholz; Stephan Stilgenbauer; Hendrik G Stunnenberg; Monika Szczepanowski; Lorenz Trümper; Marc A Weniger; Steve Hoffmann; Reiner Siebert; Ingram Iaccarino
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

6.  Multifunctional role of the transcription factor Blimp-1 in coordinating plasma cell differentiation.

Authors:  Martina Minnich; Hiromi Tagoh; Peter Bönelt; Elin Axelsson; Maria Fischer; Beatriz Cebolla; Alexander Tarakhovsky; Stephen L Nutt; Markus Jaritz; Meinrad Busslinger
Journal:  Nat Immunol       Date:  2016-01-18       Impact factor: 25.606

7.  Whole-genome fingerprint of the DNA methylome during human B cell differentiation.

Authors:  Marta Kulis; Angelika Merkel; Simon Heath; Ana C Queirós; Ronald P Schuyler; Giancarlo Castellano; Renée Beekman; Emanuele Raineri; Anna Esteve; Guillem Clot; Néria Verdaguer-Dot; Martí Duran-Ferrer; Nuria Russiñol; Roser Vilarrasa-Blasi; Simone Ecker; Vera Pancaldi; Daniel Rico; Lidia Agueda; Julie Blanc; David Richardson; Laura Clarke; Avik Datta; Marien Pascual; Xabier Agirre; Felipe Prosper; Diego Alignani; Bruno Paiva; Gersende Caron; Thierry Fest; Marcus O Muench; Marina E Fomin; Seung-Tae Lee; Joseph L Wiemels; Alfonso Valencia; Marta Gut; Paul Flicek; Hendrik G Stunnenberg; Reiner Siebert; Ralf Küppers; Ivo G Gut; Elías Campo; José I Martín-Subero
Journal:  Nat Genet       Date:  2015-06-08       Impact factor: 38.330

8.  Tet2 and Tet3 cooperate with B-lineage transcription factors to regulate DNA modification and chromatin accessibility.

Authors:  Chan-Wang Lio; Jiayuan Zhang; Edahí González-Avalos; Patrick G Hogan; Xing Chang; Anjana Rao
Journal:  Elife       Date:  2016-11-21       Impact factor: 8.140

Review 9.  The multidimensional mechanisms of long noncoding RNA function.

Authors:  Francesco P Marchese; Ivan Raimondi; Maite Huarte
Journal:  Genome Biol       Date:  2017-10-31       Impact factor: 13.583

10.  Plasma cell differentiation is controlled by multiple cell division-coupled epigenetic programs.

Authors:  Christopher D Scharer; Benjamin G Barwick; Muyao Guo; Alexander P R Bally; Jeremy M Boss
Journal:  Nat Commun       Date:  2018-04-27       Impact factor: 14.919

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  2 in total

Review 1.  LncRNAs in adaptive immunity: role in physiological and pathological conditions.

Authors:  Pedro Faria Zeni; Marek Mraz
Journal:  RNA Biol       Date:  2020-11-09       Impact factor: 4.652

Review 2.  Epigenetic, Metabolic, and Immune Crosstalk in Germinal-Center-Derived B-Cell Lymphomas: Unveiling New Vulnerabilities for Rational Combination Therapies.

Authors:  Inna Serganova; Sanjukta Chakraborty; Samuel Yamshon; Yusuke Isshiki; Ryan Bucktrout; Ari Melnick; Wendy Béguelin; Roberta Zappasodi
Journal:  Front Cell Dev Biol       Date:  2022-01-07
  2 in total

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