Literature DB >> 27068419

Noise and Epigenetic Inheritance of Single-Cell Division Times Influence Population Fitness.

Bram Cerulus1, Aaron M New2, Ksenia Pougach1, Kevin J Verstrepen3.   

Abstract

The fitness effect of biological noise remains unclear. For example, even within clonal microbial populations, individual cells grow at different speeds. Although it is known that the individuals' mean growth speed can affect population-level fitness, it is unclear how or whether growth speed heterogeneity itself is subject to natural selection. Here, we show that noisy single-cell division times can significantly affect population-level growth rate. Using time-lapse microscopy to measure the division times of thousands of individual S. cerevisiae cells across different genetic and environmental backgrounds, we find that the length of individual cells' division times can vary substantially between clonal individuals and that sublineages often show epigenetic inheritance of division times. By combining these experimental measurements with mathematical modeling, we find that, for a given mean division time, increasing heterogeneity and epigenetic inheritance of division times increases the population growth rate. Furthermore, we demonstrate that the heterogeneity and epigenetic inheritance of single-cell division times can be linked with variation in the expression of catabolic genes. Taken together, our results reveal how a change in noisy single-cell behaviors can directly influence fitness through dynamics that operate independently of effects caused by changes to the mean. These results not only allow a better understanding of microbial fitness but also help to more accurately predict fitness in other clonal populations, such as tumors.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27068419      PMCID: PMC5428746          DOI: 10.1016/j.cub.2016.03.010

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  55 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

3.  The Growth Rate of Individual Bacterial Cells.

Authors:  C D Kelly; O Rahn
Journal:  J Bacteriol       Date:  1932-02       Impact factor: 3.490

4.  The effects of molecular noise and size control on variability in the budding yeast cell cycle.

Authors:  Stefano Di Talia; Jan M Skotheim; James M Bean; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2007-08-23       Impact factor: 49.962

5.  Rapid expansion and functional divergence of subtelomeric gene families in yeasts.

Authors:  Chris A Brown; Andrew W Murray; Kevin J Verstrepen
Journal:  Curr Biol       Date:  2010-05-13       Impact factor: 10.834

Review 6.  Epigenetic switches: can infidelity govern fate in microbes?

Authors:  Dominik Satory; Alasdair J E Gordon; Jennifer A Halliday; Christophe Herman
Journal:  Curr Opin Microbiol       Date:  2011-04       Impact factor: 7.934

Review 7.  Cancer progression by non-clonal chromosome aberrations.

Authors:  Henry H Q Heng; Steven W Bremer; Joshua Stevens; Karen J Ye; Fred Miller; Gou Liu; Christine J Ye
Journal:  J Cell Biochem       Date:  2006-08-15       Impact factor: 4.429

Review 8.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

9.  Tightly regulated and heritable division control in single bacterial cells.

Authors:  Dan Siegal-Gaskins; Sean Crosson
Journal:  Biophys J       Date:  2008-05-09       Impact factor: 4.033

10.  Small regulatory RNA-induced growth rate heterogeneity of Bacillus subtilis.

Authors:  Ruben A T Mars; Pierre Nicolas; Mariano Ciccolini; Ewoud Reilman; Alexander Reder; Marc Schaffer; Ulrike Mäder; Uwe Völker; Jan Maarten van Dijl; Emma L Denham
Journal:  PLoS Genet       Date:  2015-03-19       Impact factor: 5.917

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  23 in total

1.  Unbiased Fitness Estimation of Pooled Barcode or Amplicon Sequencing Studies.

Authors:  Fangfei Li; Marc L Salit; Sasha F Levy
Journal:  Cell Syst       Date:  2018-11-01       Impact factor: 10.304

Review 2.  Predictive biology: modelling, understanding and harnessing microbial complexity.

Authors:  Allison J Lopatkin; James J Collins
Journal:  Nat Rev Microbiol       Date:  2020-05-29       Impact factor: 60.633

Review 3.  Investigating cell functioning by theoretical analysis of cell-to-cell variability.

Authors:  Saša Svetina
Journal:  Eur Biophys J       Date:  2017-10-06       Impact factor: 1.733

4.  Scaling of G1 Duration with Population Doubling Time by a Cyclin in Saccharomyces cerevisiae.

Authors:  Heidi M Blank; Michelle Callahan; Ioannis P E Pistikopoulos; Aggeliki O Polymenis; Michael Polymenis
Journal:  Genetics       Date:  2018-08-27       Impact factor: 4.562

5.  Fitness effects of altering gene expression noise in Saccharomyces cerevisiae.

Authors:  Fabien Duveau; Andrea Hodgins-Davis; Brian Ph Metzger; Bing Yang; Stephen Tryban; Elizabeth A Walker; Tricia Lybrook; Patricia J Wittkopp
Journal:  Elife       Date:  2018-08-20       Impact factor: 8.140

6.  Aneuploidy Causes Non-genetic Individuality.

Authors:  Rebecca R Beach; Chiara Ricci-Tam; Christopher M Brennan; Christine A Moomau; Pei-Hsin Hsu; Bo Hua; Rebecca E Silberman; Michael Springer; Angelika Amon
Journal:  Cell       Date:  2017-04-06       Impact factor: 41.582

7.  Transition between fermentation and respiration determines history-dependent behavior in fluctuating carbon sources.

Authors:  Bram Cerulus; Abbas Jariani; Gemma Perez-Samper; Lieselotte Vermeersch; Julian Mj Pietsch; Matthew M Crane; Aaron M New; Brigida Gallone; Miguel Roncoroni; Maria C Dzialo; Sander K Govers; Jhana O Hendrickx; Eva Galle; Maarten Coomans; Pieter Berden; Sara Verbandt; Peter S Swain; Kevin J Verstrepen
Journal:  Elife       Date:  2018-10-09       Impact factor: 8.140

8.  Ergodicity, hidden bias and the growth rate gain.

Authors:  Nash D Rochman; Dan M Popescu; Sean X Sun
Journal:  Phys Biol       Date:  2018-03-14       Impact factor: 2.583

9.  Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes.

Authors:  Mohammad Soltani; Cesar A Vargas-Garcia; Duarte Antunes; Abhyudai Singh
Journal:  PLoS Comput Biol       Date:  2016-08-18       Impact factor: 4.475

Review 10.  Microbial metabolic noise.

Authors:  Andreas E Vasdekis; Abhyudai Singh
Journal:  WIREs Mech Dis       Date:  2020-11-23
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