Literature DB >> 19474076

Towards the engineering of in vitro systems.

Christoph Hold1, Sven Panke.   

Abstract

Synthetic biology aims at rationally implementing biological systems from scratch. Given the complexity of living systems and our current lack of understanding of many aspects of living cells, this is a major undertaking. The design of in vitro systems can be considerably easier, because they can consist of fewer constituents, are quasi time invariant, their parameter space can be better accessed and they can be much more easily perturbed and then analysed chemically and mathematically. However, even for simplified in vitro systems, following a comprehensively rational design procedure is still difficult. When looking at a comparatively simple system, such as a medium-sized enzymatic reaction network as it is represented by glycolysis, major issues such as a lack of comprehensive enzyme kinetics and of suitable knowledge on crucial design parameters remain. Nevertheless, in vitro systems are very suitable to overcome these obstacles and therefore well placed to act as a stepping stone to engineering living systems.

Mesh:

Year:  2009        PMID: 19474076      PMCID: PMC2843965          DOI: 10.1098/rsif.2009.0110.focus

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  97 in total

1.  Directed evolution of a genetic circuit.

Authors:  Yohei Yokobayashi; Ron Weiss; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-25       Impact factor: 11.205

Review 2.  Production of recombinant protein therapeutics in cultivated mammalian cells.

Authors:  Florian M Wurm
Journal:  Nat Biotechnol       Date:  2004-11       Impact factor: 54.908

3.  Integrated sampling procedure for metabolome analysis.

Authors:  Jochen Schaub; Carola Schiesling; Matthias Reuss; Michael Dauner
Journal:  Biotechnol Prog       Date:  2006 Sep-Oct

4.  The response of oscillating glycolysis to perturbations in the NADH/NAD system: a comparison between experiments and a computer model.

Authors:  O Richter; A Betz; C Giersch
Journal:  Biosystems       Date:  1975-07       Impact factor: 1.973

5.  Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws--a promising method for speeding up the kinetic modelling of complex metabolic networks.

Authors:  Sascha Bulik; Sergio Grimbs; Carola Huthmacher; Joachim Selbig; Hermann G Holzhütter
Journal:  FEBS J       Date:  2009-01       Impact factor: 5.542

6.  Sampling tube device for monitoring intracellular metabolite dynamics.

Authors:  D Weuster-Botz
Journal:  Anal Biochem       Date:  1997-03-15       Impact factor: 3.365

7.  A linear steady-state treatment of enzymatic chains. General properties, control and effector strength.

Authors:  R Heinrich; T A Rapoport
Journal:  Eur J Biochem       Date:  1974-02-15

Review 8.  Aging as war between chemical and biochemical processes: protein methylation and the recognition of age-damaged proteins for repair.

Authors:  Steven Clarke
Journal:  Ageing Res Rev       Date:  2003-07       Impact factor: 10.895

9.  Crystal structures of Escherichia coli ATP-dependent glucokinase and its complex with glucose.

Authors:  Vladimir V Lunin; Yunge Li; Joseph D Schrag; Pietro Iannuzzi; Miroslaw Cygler; Allan Matte
Journal:  J Bacteriol       Date:  2004-10       Impact factor: 3.490

10.  BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.

Authors:  Nicolas Le Novère; Benjamin Bornstein; Alexander Broicher; Mélanie Courtot; Marco Donizelli; Harish Dharuri; Lu Li; Herbert Sauro; Maria Schilstra; Bruce Shapiro; Jacky L Snoep; Michael Hucka
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

View more
  9 in total

1.  Synthetic biology: history, challenges and prospects.

Authors:  Jim Haseloff; Jim Ajioka
Journal:  J R Soc Interface       Date:  2009-06-03       Impact factor: 4.118

2.  The conception of life in synthetic biology.

Authors:  Anna Deplazes-Zemp
Journal:  Sci Eng Ethics       Date:  2011-04-12       Impact factor: 3.525

Review 3.  Cell-free synthetic biology: thinking outside the cell.

Authors:  C Eric Hodgman; Michael C Jewett
Journal:  Metab Eng       Date:  2011-09-18       Impact factor: 9.783

4.  A synthetic biochemistry module for production of bio-based chemicals from glucose.

Authors:  Paul H Opgenorth; Tyler P Korman; James U Bowie
Journal:  Nat Chem Biol       Date:  2016-04-11       Impact factor: 15.040

5.  Dynamics and control of the central carbon metabolism in hepatoma cells.

Authors:  Klaus Maier; Ute Hofmann; Matthias Reuss; Klaus Mauch
Journal:  BMC Syst Biol       Date:  2010-04-28

Review 6.  Biology by design: from top to bottom and back.

Authors:  Brian R Fritz; Laura E Timmerman; Nichole M Daringer; Joshua N Leonard; Michael C Jewett
Journal:  J Biomed Biotechnol       Date:  2010-11-02

Review 7.  Xenobiology: a new form of life as the ultimate biosafety tool.

Authors:  Markus Schmidt
Journal:  Bioessays       Date:  2010-04       Impact factor: 4.345

8.  BioNetCAD: design, simulation and experimental validation of synthetic biochemical networks.

Authors:  Stéphanie Rialle; Liza Felicori; Camila Dias-Lopes; Sabine Pérès; Sanaâ El Atia; Alain R Thierry; Patrick Amar; Franck Molina
Journal:  Bioinformatics       Date:  2010-07-13       Impact factor: 6.937

9.  Engineering a Seven Enzyme Biotransformation using Mathematical Modelling and Characterized Enzyme Parts.

Authors:  William Finnigan; Rhys Cutlan; Radka Snajdrova; Joseph P Adams; Jennifer A Littlechild; Nicholas J Harmer
Journal:  ChemCatChem       Date:  2019-07-04       Impact factor: 5.686

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.