Literature DB >> 27058665

Suppression of Enhancer Overactivation by a RACK7-Histone Demethylase Complex.

Hongjie Shen1, Wenqi Xu1, Rui Guo2, Bowen Rong2, Lei Gu3, Zhentian Wang2, Chenxi He2, Lijuan Zheng2, Xin Hu4, Zhen Hu4, Zhi-Ming Shao4, Pengyuan Yang5, Feizhen Wu2, Yujiang Geno Shi6, Yang Shi7, Fei Lan8.   

Abstract

Regulation of enhancer activity is important for controlling gene expression programs. Here, we report that a biochemical complex containing a potential chromatin reader, RACK7, and the histone lysine 4 tri-methyl (H3K4me3)-specific demethylase KDM5C occupies many active enhancers, including almost all super-enhancers. Loss of RACK7 or KDM5C results in overactivation of enhancers, characterized by the deposition of H3K4me3 and H3K27Ac, together with increased transcription of eRNAs and nearby genes. Furthermore, loss of RACK7 or KDM5C leads to de-repression of S100A oncogenes and various cancer-related phenotypes. Our findings reveal a RACK7/KDM5C-regulated, dynamic interchange between histone H3K4me1 and H3K4me3 at active enhancers, representing an additional layer of regulation of enhancer activity. We propose that RACK7/KDM5C functions as an enhancer "brake" to ensure appropriate enhancer activity, which, when compromised, could contribute to tumorigenesis.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27058665      PMCID: PMC4826479          DOI: 10.1016/j.cell.2016.02.064

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  56 in total

1.  Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

Authors:  Michiel Vermeulen; Klaas W Mulder; Sergei Denissov; W W M Pim Pijnappel; Frederik M A van Schaik; Radhika A Varier; Marijke P A Baltissen; Henk G Stunnenberg; Matthias Mann; H Th Marc Timmers
Journal:  Cell       Date:  2007-09-20       Impact factor: 41.582

2.  BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing.

Authors:  Rui Guo; Lijuan Zheng; Juw Won Park; Ruitu Lv; Hao Chen; Fangfang Jiao; Wenqi Xu; Shirong Mu; Hong Wen; Jinsong Qiu; Zhentian Wang; Pengyuan Yang; Feizhen Wu; Jingyi Hui; Xiangdong Fu; Xiaobing Shi; Yujiang Geno Shi; Yi Xing; Fei Lan; Yang Shi
Journal:  Mol Cell       Date:  2014-09-25       Impact factor: 17.970

3.  Super-enhancers in the control of cell identity and disease.

Authors:  Denes Hnisz; Brian J Abraham; Tong Ihn Lee; Ashley Lau; Violaine Saint-André; Alla A Sigova; Heather A Hoke; Richard A Young
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

4.  Subcellular distribution of S100 proteins in tumor cells and their relocation in response to calcium activation.

Authors:  A Mueller; T Bächi; M Höchli; B W Schäfer; C W Heizmann
Journal:  Histochem Cell Biol       Date:  1999-06       Impact factor: 4.304

5.  The von Hippel-Lindau tumor suppressor protein regulates gene expression and tumor growth through histone demethylase JARID1C.

Authors:  X Niu; T Zhang; L Liao; L Zhou; D J Lindner; M Zhou; B Rini; Q Yan; H Yang
Journal:  Oncogene       Date:  2011-07-04       Impact factor: 9.867

Review 6.  S100 proteins in cancer.

Authors:  Anne R Bresnick; David J Weber; Danna B Zimmer
Journal:  Nat Rev Cancer       Date:  2015-02       Impact factor: 60.716

7.  Selective inhibition of tumor oncogenes by disruption of super-enhancers.

Authors:  Jakob Lovén; Heather A Hoke; Charles Y Lin; Ashley Lau; David A Orlando; Christopher R Vakoc; James E Bradner; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

Review 8.  Enhancer function: mechanistic and genome-wide insights come together.

Authors:  Jennifer L Plank; Ann Dean
Journal:  Mol Cell       Date:  2014-07-03       Impact factor: 17.970

9.  Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes.

Authors:  Kaifu Chen; Zhong Chen; Dayong Wu; Lili Zhang; Xueqiu Lin; Jianzhong Su; Benjamin Rodriguez; Yuanxin Xi; Zheng Xia; Xi Chen; Xiaobing Shi; Qianben Wang; Wei Li
Journal:  Nat Genet       Date:  2015-08-24       Impact factor: 38.330

10.  Recurrent somatic mutations in regulatory regions of human cancer genomes.

Authors:  Collin Melton; Jason A Reuter; Damek V Spacek; Michael Snyder
Journal:  Nat Genet       Date:  2015-06-08       Impact factor: 38.330

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  74 in total

1.  Protein kinase C binding protein 1 inhibits hypoxia-inducible factor-1 in the heart.

Authors:  Kathryn J Schunke; Chad B Walton; David R Veal; Chrisy T Mafnas; Cynthia D Anderson; Allison L Williams; Ralph V Shohet
Journal:  Cardiovasc Res       Date:  2019-07-01       Impact factor: 10.787

Review 2.  Super-Enhancer-Driven Transcriptional Dependencies in Cancer.

Authors:  Satyaki Sengupta; Rani E George
Journal:  Trends Cancer       Date:  2017-04-12

3.  ZMYND8 acetylation mediates HIF-dependent breast cancer progression and metastasis.

Authors:  Yan Chen; Bo Zhang; Lei Bao; Lai Jin; Mingming Yang; Yan Peng; Ashwani Kumar; Jennifer E Wang; Chenliang Wang; Xuan Zou; Chao Xing; Yingfei Wang; Weibo Luo
Journal:  J Clin Invest       Date:  2018-04-09       Impact factor: 14.808

Review 4.  JARID1 Histone Demethylases: Emerging Targets in Cancer.

Authors:  Kayla M Harmeyer; Nicole D Facompre; Meenhard Herlyn; Devraj Basu
Journal:  Trends Cancer       Date:  2017-09-12

5.  "Z4" Complex Member Fusions in NUT Carcinoma: Implications for a Novel Oncogenic Mechanism.

Authors:  Hitoshi Shiota; Janine E Elya; Artyom A Alekseyenko; Pauline M Chou; Shelby A Gorman; Olena Barbash; Kelly Becht; Kristina Danga; Mitzi I Kuroda; Valentina Nardi; Christopher A French
Journal:  Mol Cancer Res       Date:  2018-08-23       Impact factor: 5.852

Review 6.  Chromatin and Epigenetics at the Forefront: Finding Clues among Peaks.

Authors:  Sergi Aranda; Yang Shi; Luciano Di Croce
Journal:  Mol Cell Biol       Date:  2016-09-12       Impact factor: 4.272

Review 7.  Histone Marks in the 'Driver's Seat': Functional Roles in Steering the Transcription Cycle.

Authors:  Leah A Gates; Charles E Foulds; Bert W O'Malley
Journal:  Trends Biochem Sci       Date:  2017-11-06       Impact factor: 13.807

Review 8.  Epigenetic Etiology of Intellectual Disability.

Authors:  Shigeki Iwase; Nathalie G Bérubé; Zhaolan Zhou; Nael Nadif Kasri; Elena Battaglioli; Marilyn Scandaglia; Angel Barco
Journal:  J Neurosci       Date:  2017-11-08       Impact factor: 6.167

9.  Double duty: ZMYND8 in the DNA damage response and cancer.

Authors:  Fade Gong; Kyle M Miller
Journal:  Cell Cycle       Date:  2018-03-19       Impact factor: 4.534

Review 10.  Enhancer deregulation in cancer and other diseases.

Authors:  Hans-Martin Herz
Journal:  Bioessays       Date:  2016-08-29       Impact factor: 4.345

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