Literature DB >> 25263594

BS69/ZMYND11 reads and connects histone H3.3 lysine 36 trimethylation-decorated chromatin to regulated pre-mRNA processing.

Rui Guo1, Lijuan Zheng1, Juw Won Park2, Ruitu Lv1, Hao Chen1, Fangfang Jiao1, Wenqi Xu1, Shirong Mu3, Hong Wen4, Jinsong Qiu5, Zhentian Wang1, Pengyuan Yang1, Feizhen Wu1, Jingyi Hui3, Xiangdong Fu5, Xiaobing Shi4, Yujiang Geno Shi6, Yi Xing7, Fei Lan8, Yang Shi9.   

Abstract

BS69 (also called ZMYND11) contains tandemly arranged PHD, BROMO, and PWWP domains, which are chromatin recognition modalities. Here, we show that BS69 selectively recognizes histone variant H3.3 lysine 36 trimethylation (H3.3K36me3) via its chromatin-binding domains. We further identify BS69 association with RNA splicing regulators, including the U5 snRNP components of the spliceosome, such as EFTUD2. Remarkably, RNA sequencing shows that BS69 mainly regulates intron retention (IR), which is the least understood RNA alternative splicing event in mammalian cells. Biochemical and genetic experiments demonstrate that BS69 promotes IR by antagonizing EFTUD2 through physical interactions. We further show that regulation of IR by BS69 also depends on its binding to H3K36me3-decorated chromatin. Taken together, our study identifies an H3.3K36me3-specific reader and a regulator of IR and reveals that BS69 connects histone H3.3K36me3 to regulated RNA splicing, providing significant, important insights into chromatin regulation of pre-mRNA processing.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25263594      PMCID: PMC4363072          DOI: 10.1016/j.molcel.2014.08.022

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  53 in total

1.  Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.

Authors:  Brian D Strahl; Patrick A Grant; Scott D Briggs; Zu-Wen Sun; James R Bone; Jennifer A Caldwell; Sahana Mollah; Richard G Cook; Jeffrey Shabanowitz; Donald F Hunt; C David Allis
Journal:  Mol Cell Biol       Date:  2002-03       Impact factor: 4.272

2.  Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation.

Authors:  Jiaxu Li; Danesh Moazed; Steven P Gygi
Journal:  J Biol Chem       Date:  2002-10-14       Impact factor: 5.157

3.  Serine 31 phosphorylation of histone variant H3.3 is specific to regions bordering centromeres in metaphase chromosomes.

Authors:  Sandra B Hake; Benjamin A Garcia; Monika Kauer; Stephen P Baker; Jeffrey Shabanowitz; Donald F Hunt; C David Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-25       Impact factor: 11.205

4.  The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation.

Authors:  Daniel Schaft; Assen Roguev; Kimberly M Kotovic; Anna Shevchenko; Mihail Sarov; Andrej Shevchenko; Karla M Neugebauer; A Francis Stewart
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

5.  Crystal structure of ADP-ribosylated ribosomal translocase from Saccharomyces cerevisiae.

Authors:  René Jørgensen; Susan P Yates; David J Teal; Jakob Nilsson; Gerry A Prentice; A Rod Merrill; Gregers Rom Andersen
Journal:  J Biol Chem       Date:  2004-08-16       Impact factor: 5.157

6.  Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals.

Authors:  Gene Yeo; Christopher B Burge
Journal:  J Comput Biol       Date:  2004       Impact factor: 1.479

Review 7.  Coupling mRNA processing with transcription in time and space.

Authors:  David L Bentley
Journal:  Nat Rev Genet       Date:  2014-02-11       Impact factor: 53.242

8.  Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis.

Authors:  Hideaki Tagami; Dominique Ray-Gallet; Geneviève Almouzni; Yoshihiro Nakatani
Journal:  Cell       Date:  2004-01-09       Impact factor: 41.582

9.  The ribosomal translocase homologue Snu114p is involved in unwinding U4/U6 RNA during activation of the spliceosome.

Authors:  Cornelia Bartels; Christine Klatt; Reinhard Lührmann; Patrizia Fabrizio
Journal:  EMBO Rep       Date:  2002-08-16       Impact factor: 8.807

10.  BS69, a novel adenovirus E1A-associated protein that inhibits E1A transactivation.

Authors:  G Hateboer; A Gennissen; Y F Ramos; R M Kerkhoven; V Sonntag-Buck; H G Stunnenberg; R Bernards
Journal:  EMBO J       Date:  1995-07-03       Impact factor: 11.598

View more
  93 in total

Review 1.  SETting the Stage for Cancer Development: SETD2 and the Consequences of Lost Methylation.

Authors:  Catherine C Fahey; Ian J Davis
Journal:  Cold Spring Harb Perspect Med       Date:  2017-05-01       Impact factor: 6.915

2.  Suppression of Enhancer Overactivation by a RACK7-Histone Demethylase Complex.

Authors:  Hongjie Shen; Wenqi Xu; Rui Guo; Bowen Rong; Lei Gu; Zhentian Wang; Chenxi He; Lijuan Zheng; Xin Hu; Zhen Hu; Zhi-Ming Shao; Pengyuan Yang; Feizhen Wu; Yujiang Geno Shi; Yang Shi; Fei Lan
Journal:  Cell       Date:  2016-04-07       Impact factor: 41.582

Review 3.  Histone exchange, chromatin structure and the regulation of transcription.

Authors:  Swaminathan Venkatesh; Jerry L Workman
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

Review 4.  Point mutations in an epigenetic factor lead to multiple types of bone tumors: role of H3.3 histone variant in bone development and disease.

Authors:  Shigeaki Kato; Takeaki Ishii; Alexander Kouzmenko
Journal:  Bonekey Rep       Date:  2015-07-01

5.  Genetic mosaics and time-lapse imaging identify functions of histone H3.3 residues in mouse oocytes and embryos.

Authors:  Liquan Zhou; Boris Baibakov; Bertram Canagarajah; Bo Xiong; Jurrien Dean
Journal:  Development       Date:  2016-12-19       Impact factor: 6.868

Review 6.  Variants of core histones and their roles in cell fate decisions, development and cancer.

Authors:  Marcus Buschbeck; Sandra B Hake
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-01       Impact factor: 94.444

Review 7.  The roles of histone variants in fine-tuning chromatin organization and function.

Authors:  Sara Martire; Laura A Banaszynski
Journal:  Nat Rev Mol Cell Biol       Date:  2020-07-14       Impact factor: 94.444

Review 8.  H3K36 methyltransferases as cancer drug targets: rationale and perspectives for inhibitor development.

Authors:  David S Rogawski; Jolanta Grembecka; Tomasz Cierpicki
Journal:  Future Med Chem       Date:  2016-08-22       Impact factor: 3.808

Review 9.  PWWP domains and their modes of sensing DNA and histone methylated lysines.

Authors:  Germana B Rona; Elis C A Eleutherio; Anderson S Pinheiro
Journal:  Biophys Rev       Date:  2016-01-14

10.  Structure/Function Analysis of Recurrent Mutations in SETD2 Protein Reveals a Critical and Conserved Role for a SET Domain Residue in Maintaining Protein Stability and Histone H3 Lys-36 Trimethylation.

Authors:  Kathryn E Hacker; Catherine C Fahey; Stephen A Shinsky; Yun-Chen J Chiang; Julia V DiFiore; Deepak Kumar Jha; Andy H Vo; Jordan A Shavit; Ian J Davis; Brian D Strahl; W Kimryn Rathmell
Journal:  J Biol Chem       Date:  2016-08-15       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.